Fluorine in PDB 6jyl: The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State

The structure of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State (pdb code 6jyl). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State, PDB code: 6jyl:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ K:F1202 b:1.0 occ:1.00 F1 K:BEF1202 0.0 1.0 1.0 BE K:BEF1202 1.7 1.0 1.0 F3 K:BEF1202 2.6 1.0 1.0 F2 K:BEF1202 2.8 1.0 1.0 MG K:MG1203 2.9 0.7 1.0 OE2 K:GLU325 2.9 0.6 1.0 O3B K:ADP1201 3.3 0.1 1.0 OD2 K:ASP324 3.6 0.1 1.0 OD1 K:ASP324 3.9 0.1 1.0 CD K:GLU325 4.1 0.6 1.0 O1B K:ADP1201 4.1 0.1 1.0 CG K:ASP324 4.2 0.1 1.0 PB K:ADP1201 4.2 0.1 1.0 CA K:GLY584 4.2 0.5 1.0 CE K:LYS227 4.5 0.8 1.0 NZ K:LYS227 4.6 0.8 1.0 CG K:GLU325 4.6 0.6 1.0 O K:LEU583 4.7 0.3 1.0 O1A K:ADP1201 4.9 0.1 1.0

Fluorine binding site 2 out of 3 in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ K:F1202 b:1.0 occ:1.00 F2 K:BEF1202 0.0 1.0 1.0 BE K:BEF1202 1.7 1.0 1.0 O1B K:ADP1201 2.5 0.1 1.0 F3 K:BEF1202 2.7 1.0 1.0 NH1 K:ARG614 2.8 0.1 1.0 F1 K:BEF1202 2.8 1.0 1.0 NH1 K:ARG611 2.9 0.5 1.0 PB K:ADP1201 3.6 0.1 1.0 CB K:MET223 3.6 0.1 1.0 O3B K:ADP1201 3.8 0.1 1.0 OE1 K:GLN607 3.8 0.1 1.0 CZ K:ARG611 4.1 0.5 1.0 CZ K:ARG614 4.1 0.1 1.0 N K:GLY224 4.2 0.5 1.0 MG K:MG1203 4.3 0.7 1.0 CA K:MET223 4.3 0.1 1.0 O2B K:ADP1201 4.4 0.1 1.0 CA K:GLY584 4.4 0.5 1.0 OE2 K:GLU325 4.4 0.6 1.0 NH2 K:ARG611 4.4 0.5 1.0 O1A K:ADP1201 4.5 0.1 1.0 NZ K:LYS227 4.7 0.8 1.0 CG K:MET223 4.7 0.1 1.0 NH2 K:ARG614 4.7 0.1 1.0 C K:MET223 4.7 0.1 1.0 O3A K:ADP1201 4.8 0.1 1.0 N K:GLY584 4.9 0.5 1.0 CD K:GLN607 4.9 0.1 1.0 SD K:MET223 5.0 0.1 1.0

Fluorine binding site 3 out of 3 in the The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Crosslinked Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ K:F1202 b:1.0 occ:1.00 F3 K:BEF1202 0.0 1.0 1.0 BE K:BEF1202 1.7 1.0 1.0 MG K:MG1203 2.4 0.7 1.0 F1 K:BEF1202 2.6 1.0 1.0 F2 K:BEF1202 2.7 1.0 1.0 O1A K:ADP1201 3.0 0.1 1.0 O K:GLY584 3.1 0.5 1.0 CA K:GLY584 3.2 0.5 1.0 O1B K:ADP1201 3.3 0.1 1.0 O3B K:ADP1201 3.4 0.1 1.0 C K:GLY584 3.5 0.5 1.0 NH1 K:ARG614 3.7 0.1 1.0 PB K:ADP1201 3.9 0.1 1.0 NH1 K:ARG611 4.1 0.5 1.0 PA K:ADP1201 4.2 0.1 1.0 NH2 K:ARG614 4.4 0.1 1.0 N K:GLY584 4.4 0.5 1.0 CZ K:ARG614 4.5 0.1 1.0 O3A K:ADP1201 4.6 0.1 1.0 N K:ILE585 4.7 0.8 1.0 O2A K:ADP1201 4.8 0.1 1.0 OE2 K:GLU325 4.8 0.6 1.0 O K:ILE585 4.8 0.8 1.0

L.Yan, H.Wu, X.Li, N.Gao, Z.Chen. Structures of the Iswi-Nucleosome Complex Reveal A Conserved Mechanism of Chromatin Remodeling. Nat.Struct.Mol.Biol. V. 26 258 2019.
ISSN: ESSN 1545-9985
PubMed: 30872815
DOI: 10.1038/S41594-019-0199-9