Fluorine in PDB 6k1p: The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State

The structure of The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State (pdb code 6k1p). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State, PDB code: 6k1p:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ K:F1201 b:89.2 occ:1.00 F1 K:BEF1201 0.0 89.2 1.0 BE K:BEF1201 1.7 89.2 1.0 O1B K:ADP1203 2.4 0.3 1.0 NH2 K:ARG611 2.5 94.6 1.0 F3 K:BEF1201 2.6 89.2 1.0 F2 K:BEF1201 2.8 89.2 1.0 CA K:GLY584 3.8 82.5 1.0 CZ K:ARG611 3.8 94.6 1.0 PB K:ADP1203 3.9 0.3 1.0 O1A K:ADP1203 3.9 0.3 1.0 NE K:ARG614 3.9 0.5 1.0 CD K:ARG614 4.0 0.5 1.0 MG K:MG1202 4.2 97.2 1.0 CZ K:ARG614 4.2 0.5 1.0 OE2 K:GLU325 4.4 82.4 1.0 N K:GLY584 4.5 82.5 1.0 NH2 K:ARG614 4.5 0.5 1.0 NH1 K:ARG611 4.5 94.6 1.0 C K:GLY584 4.6 82.5 1.0 CD K:ARG611 4.6 94.6 1.0 NE K:ARG611 4.6 94.6 1.0 O3A K:ADP1203 4.6 0.3 1.0 O2B K:ADP1203 4.7 0.3 1.0 O3B K:ADP1203 4.7 0.3 1.0 O K:GLY584 4.7 82.5 1.0 CB K:MET223 4.8 0.8 1.0 NH1 K:ARG614 4.8 0.5 1.0 PA K:ADP1203 4.9 0.3 1.0

Fluorine binding site 2 out of 3 in the The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ K:F1201 b:89.2 occ:1.00 F2 K:BEF1201 0.0 89.2 1.0 BE K:BEF1201 1.7 89.2 1.0 O K:GLY584 2.2 82.5 1.0 CA K:GLY584 2.5 82.5 1.0 C K:GLY584 2.6 82.5 1.0 F3 K:BEF1201 2.7 89.2 1.0 F1 K:BEF1201 2.8 89.2 1.0 O1A K:ADP1203 3.4 0.3 1.0 MG K:MG1202 3.4 97.2 1.0 N K:GLY584 3.9 82.5 1.0 N K:ILE585 3.9 87.8 1.0 O1B K:ADP1203 3.9 0.3 1.0 NH2 K:ARG611 4.1 94.6 1.0 NH1 K:ARG614 4.1 0.5 1.0 CZ K:ARG614 4.3 0.5 1.0 O K:ILE585 4.4 87.8 1.0 ND2 K:ASN259 4.5 80.8 1.0 O K:LEU583 4.6 80.9 1.0 C K:ILE585 4.6 87.8 1.0 NH2 K:ARG614 4.7 0.5 1.0 CA K:ILE585 4.7 87.8 1.0 C K:LEU583 4.7 80.9 1.0 NE K:ARG614 4.7 0.5 1.0 PA K:ADP1203 4.8 0.3 1.0

Fluorine binding site 3 out of 3 in the The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Complex of Iswi-Nucleosome in the Adp.Bef-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ K:F1201 b:89.2 occ:1.00 F3 K:BEF1201 0.0 89.2 1.0 BE K:BEF1201 1.7 89.2 1.0 OE2 K:GLU325 2.6 82.4 1.0 F1 K:BEF1201 2.6 89.2 1.0 F2 K:BEF1201 2.7 89.2 1.0 MG K:MG1202 3.0 97.2 1.0 CA K:GLY584 3.1 82.5 1.0 CD K:GLU325 3.5 82.4 1.0 O K:LEU583 3.5 80.9 1.0 O1B K:ADP1203 3.7 0.3 1.0 NH2 K:ARG611 3.7 94.6 1.0 N K:GLY584 3.9 82.5 1.0 C K:LEU583 4.0 80.9 1.0 CG K:GLU325 4.1 82.4 1.0 C K:GLY584 4.3 82.5 1.0 O K:GLY584 4.4 82.5 1.0 OE1 K:GLU325 4.5 82.4 1.0 OD2 K:ASP324 4.6 79.5 1.0 CZ K:ARG611 4.7 94.6 1.0 O1A K:ADP1203 4.8 0.3 1.0 PB K:ADP1203 4.9 0.3 1.0 O3B K:ADP1203 4.9 0.3 1.0

L.Yan, H.Wu, X.Li, N.Gao, Z.Chen. Structures of the Iswi-Nucleosome Complex Reveal A Conserved Mechanism of Chromatin Remodeling. Nat.Struct.Mol.Biol. V. 26 258 2019.
ISSN: ESSN 1545-9985
PubMed: 30872815
DOI: 10.1038/S41594-019-0199-9