Atomistry » Fluorine » PDB 6ngr-6no9 » 6nkt
Atomistry »
  Fluorine »
    PDB 6ngr-6no9 »
      6nkt »

Fluorine in PDB 6nkt: Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp

Enzymatic activity of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp

All present enzymatic activity of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp:
2.7.7.7;

Protein crystallography data

The structure of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp, PDB code: 6nkt was solved by V.K.Batra, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.86 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.330, 79.669, 54.673, 90.00, 106.36, 90.00
R / Rfree (%) 19.9 / 30.3

Other elements in 6nkt:

The structure of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp (pdb code 6nkt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp, PDB code: 6nkt:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6nkt

Go back to Fluorine Binding Sites List in 6nkt
Fluorine binding site 1 out of 2 in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
T:F101

b:97.8
occ:1.00
F1B T:GFF101 0.0 97.8 1.0
C3B T:GFF101 1.4 1.0 1.0
F2B T:GFF101 2.2 0.7 1.0
P3 T:GFF101 2.7 94.2 1.0
P2 T:GFF101 2.7 0.5 1.0
O1B T:GFF101 2.9 97.3 1.0
O3G T:GFF101 3.0 79.5 1.0
O2G T:GFF101 3.3 77.9 1.0
O2B T:GFF101 3.6 91.6 1.0
O3A T:GFF101 3.9 95.4 1.0
CB A:SER180 3.9 66.3 1.0
O1G T:GFF101 3.9 72.3 1.0
NH2 A:ARG183 4.5 73.9 1.0
N A:SER180 4.8 61.5 1.0
OG A:SER180 4.8 64.4 1.0
CA A:SER180 5.0 59.0 1.0

Fluorine binding site 2 out of 2 in 6nkt

Go back to Fluorine Binding Sites List in 6nkt
Fluorine binding site 2 out of 2 in the Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Ternary Complex Crystal Structure of K289M Variant of Dna Polymerase Beta with Beta-Gamma Difluoro Analogue of Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
T:F101

b:0.7
occ:1.00
F2B T:GFF101 0.0 0.7 1.0
C3B T:GFF101 1.4 1.0 1.0
F1B T:GFF101 2.2 97.8 1.0
P2 T:GFF101 2.6 0.5 1.0
P3 T:GFF101 2.7 94.2 1.0
O3A T:GFF101 2.8 95.4 1.0
O2G T:GFF101 2.9 77.9 1.0
O1G T:GFF101 3.4 72.3 1.0
O1B T:GFF101 3.5 97.3 1.0
O2B T:GFF101 3.8 91.6 1.0
O3G T:GFF101 3.9 79.5 1.0
O2A T:GFF101 4.0 76.5 1.0
P1 T:GFF101 4.0 99.5 1.0
O1A T:GFF101 4.7 71.8 1.0

Reference:

V.K.Batra, S.H.Wilson. Ternary Complex Crystal Structure To Be Published.
Page generated: Tue Jul 15 13:46:05 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy