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Fluorine in PDB 6o1h: Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site

Enzymatic activity of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site

All present enzymatic activity of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site:
4.2.1.20;

Protein crystallography data

The structure of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site, PDB code: 6o1h was solved by E.Hilario, M.F.Dunn, L.J.Mueller, L.Fan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.31 / 1.64
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 183.749, 60.720, 67.210, 90.00, 94.63, 90.00
R / Rfree (%) 15.4 / 19.9

Other elements in 6o1h:

The structure of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site also contains other interesting chemical elements:

Caesium (Cs) 5 atoms
Chlorine (Cl) 24 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site (pdb code 6o1h). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site, PDB code: 6o1h:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6o1h

Go back to Fluorine Binding Sites List in 6o1h
Fluorine binding site 1 out of 3 in the Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:27.9
occ:1.00
F9F A:F9F403 0.0 27.9 1.0
C8 A:F9F403 1.3 28.0 1.0
F10 A:F9F403 2.1 27.2 1.0
F11 A:F9F403 2.1 28.7 1.0
O7 A:F9F403 2.2 27.6 1.0
C1 A:F9F403 2.9 27.2 1.0
C6 A:F9F403 2.9 26.4 1.0
O A:HOH700 3.1 29.2 1.0
CD1 A:ILE153 3.5 29.2 1.0
O B:HOH712 3.6 27.4 1.0
CZ A:PHE212 3.7 26.3 1.0
O A:HOH576 4.0 25.6 1.0
CG1 A:ILE153 4.0 29.5 1.0
CE1 A:PHE212 4.0 27.3 1.0
CD2 A:LEU177 4.1 30.2 1.0
C2 A:F9F403 4.1 26.7 1.0
C5 A:F9F403 4.2 27.2 1.0
CG A:LEU177 4.4 31.4 1.0
CD1 A:LEU177 4.4 29.9 1.0
CG2 A:ILE153 4.4 27.7 1.0
CE2 A:PHE212 4.6 27.5 1.0
CB A:ILE153 4.8 27.6 1.0

Fluorine binding site 2 out of 3 in 6o1h

Go back to Fluorine Binding Sites List in 6o1h
Fluorine binding site 2 out of 3 in the Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:27.2
occ:1.00
F10 A:F9F403 0.0 27.2 1.0
C8 A:F9F403 1.3 28.0 1.0
F11 A:F9F403 2.1 28.7 1.0
F9F A:F9F403 2.1 27.9 1.0
O7 A:F9F403 2.1 27.6 1.0
O A:HOH576 3.0 25.6 1.0
O A:HOH700 3.1 29.2 1.0
O A:ALA129 3.2 22.5 1.0
O B:HOH712 3.4 27.4 1.0
CB B:PRO18 3.4 24.6 1.0
C1 A:F9F403 3.5 27.2 1.0
CB A:ALA59 3.9 24.3 1.0
CG B:PRO18 4.0 24.0 1.0
C A:ALA129 4.0 21.8 1.0
CB A:ALA129 4.0 23.6 1.0
CA A:ALA129 4.1 23.0 1.0
CA B:PRO18 4.1 24.1 1.0
C6 A:F9F403 4.2 26.4 1.0
O A:HOH605 4.2 30.8 1.0
C2 A:F9F403 4.5 26.7 1.0
CZ A:PHE212 4.8 26.3 1.0
CG1 A:ILE153 4.9 29.5 1.0
N B:GLN19 4.9 24.0 1.0
CD1 A:ILE153 4.9 29.2 1.0
C B:PRO18 5.0 23.1 1.0

Fluorine binding site 3 out of 3 in 6o1h

Go back to Fluorine Binding Sites List in 6o1h
Fluorine binding site 3 out of 3 in the Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Tryptophan Synthase Q114A Mutant in Complex with N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site, Cesium Ion at the Metal Coordination Site, and 2-Aminophenol Quinonoid at the Enzyme Beta Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:28.7
occ:1.00
F11 A:F9F403 0.0 28.7 1.0
C8 A:F9F403 1.3 28.0 1.0
F10 A:F9F403 2.1 27.2 1.0
F9F A:F9F403 2.1 27.9 1.0
O7 A:F9F403 2.2 27.6 1.0
C1 A:F9F403 2.9 27.2 1.0
C6 A:F9F403 2.9 26.4 1.0
O A:HOH576 3.2 25.6 1.0
CA A:ALA129 3.4 23.0 1.0
CD1 A:ILE153 3.5 29.2 1.0
CD2 A:LEU127 3.5 24.6 1.0
O A:ALA129 3.6 22.5 1.0
CB A:ALA129 3.6 23.6 1.0
CG1 A:ILE153 3.6 29.5 1.0
C A:ALA129 4.0 21.8 1.0
C2 A:F9F403 4.1 26.7 1.0
C5 A:F9F403 4.2 27.2 1.0
N A:ALA129 4.5 23.3 1.0
O B:HOH712 4.5 27.4 1.0
O A:HOH563 4.5 30.6 1.0
CG A:LEU127 4.7 24.9 1.0
CD1 A:LEU127 4.7 24.7 1.0
O A:HOH700 4.8 29.2 1.0
CB A:ILE153 4.9 27.6 1.0
O A:VAL128 4.9 22.1 1.0

Reference:

E.Hilario, M.F.Dunn, L.J.Mueller, L.Fan. Crystal Structure of Salmonella Typhimurium Tryptophan Synthase Mutant Beta-Q114A with 2-({[4-(Trifluoromethoxy)Phenyl]Sulfonyl}Amino)Ethyl Dihydrogen Phosphate (F9F) at the Alpha-Site, Cesium Ion at the Metal Coordination Site, and [3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4-Ylmethyl] -Serine (Pls) at the Beta-Site. To Be Published.
Page generated: Thu Aug 1 23:17:48 2024

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