Atomistry » Fluorine » PDB 6noj-6oac » 6o9o
Atomistry »
  Fluorine »
    PDB 6noj-6oac »
      6o9o »

Fluorine in PDB 6o9o: Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1

Enzymatic activity of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1

All present enzymatic activity of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1:
2.1.1.43;

Protein crystallography data

The structure of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1, PDB code: 6o9o was solved by P.A.Elkins, L.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.61 / 1.59
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.433, 66.636, 107.340, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20

Other elements in 6o9o:

The structure of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1 (pdb code 6o9o). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1, PDB code: 6o9o:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6o9o

Go back to Fluorine Binding Sites List in 6o9o
Fluorine binding site 1 out of 3 in the Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F510

b:33.5
occ:1.00
F01 A:LUP510 0.0 33.5 1.0
C02 A:LUP510 1.3 32.9 1.0
F03 A:LUP510 2.1 31.3 1.0
F04 A:LUP510 2.1 38.5 1.0
C05 A:LUP510 2.3 30.2 1.0
C06 A:LUP510 2.8 30.8 1.0
CB A:GLU294 3.3 24.7 1.0
CG A:GLU294 3.4 30.3 1.0
CA A:GLU294 3.5 20.1 1.0
SG A:CYS333 3.7 17.9 1.0
CD A:GLU294 4.1 34.5 1.0
C07 A:LUP510 4.1 31.7 1.0
N A:GLU294 4.2 19.4 1.0
O A:HOH829 4.2 37.0 1.0
O A:HOH756 4.3 33.6 1.0
OE2 A:GLU294 4.4 36.0 1.0
O A:HOH808 4.5 26.6 1.0
CD A:LYS297 4.6 24.7 1.0
OE1 A:GLU294 4.7 33.0 1.0
CD2 A:LEU290 4.7 18.1 1.0
C A:GLU294 4.8 20.4 1.0
O A:LEU290 4.9 20.4 1.0
C A:ILE293 4.9 18.9 1.0

Fluorine binding site 2 out of 3 in 6o9o

Go back to Fluorine Binding Sites List in 6o9o
Fluorine binding site 2 out of 3 in the Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F510

b:31.3
occ:1.00
F03 A:LUP510 0.0 31.3 1.0
C02 A:LUP510 1.3 32.9 1.0
F01 A:LUP510 2.1 33.5 1.0
F04 A:LUP510 2.1 38.5 1.0
C05 A:LUP510 2.3 30.2 1.0
C06 A:LUP510 3.0 30.8 1.0
CD A:GLU294 3.2 34.5 1.0
CB A:GLU294 3.3 24.7 1.0
CG A:GLU294 3.4 30.3 1.0
OE1 A:GLU294 3.5 33.0 1.0
OE2 A:GLU294 3.6 36.0 1.0
O A:HOH830 3.6 33.8 1.0
O A:HOH732 3.7 39.6 1.0
O A:HOH852 4.0 39.6 1.0
CA A:GLU294 4.3 20.1 1.0
C07 A:LUP510 4.4 31.7 1.0
O A:LEU290 4.5 20.4 1.0
CD2 A:LEU290 4.7 18.1 1.0
CD A:LYS329 4.8 15.9 1.0
N A:GLU294 4.9 19.4 1.0

Fluorine binding site 3 out of 3 in 6o9o

Go back to Fluorine Binding Sites List in 6o9o
Fluorine binding site 3 out of 3 in the Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of SMYD3 with Potent and Selective Isoxazole Amide Inhibitor 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F510

b:38.5
occ:1.00
F04 A:LUP510 0.0 38.5 1.0
C02 A:LUP510 1.3 32.9 1.0
F03 A:LUP510 2.1 31.3 1.0
F01 A:LUP510 2.1 33.5 1.0
C05 A:LUP510 2.3 30.2 1.0
CD2 A:LEU290 3.3 18.1 1.0
CB A:LYS329 3.5 15.2 1.0
C06 A:LUP510 3.6 30.8 1.0
SG A:CYS333 3.9 17.9 1.0
CG A:LYS329 4.0 16.1 1.0
CD A:LYS329 4.0 15.9 1.0
CG A:LEU290 4.3 17.9 1.0
CD1 A:LEU290 4.4 18.8 1.0
O A:LYS329 4.5 16.4 1.0
CA A:LYS329 4.5 13.1 1.0
CB A:GLU294 4.5 24.7 1.0
CB A:LEU290 4.6 21.3 1.0
O A:HOH830 4.6 33.8 1.0
C A:LYS329 4.6 14.2 1.0
C07 A:LUP510 4.8 31.7 1.0
O A:HOH808 4.8 26.6 1.0
O A:LEU290 4.9 20.4 1.0
O A:HOH637 4.9 20.5 1.0

Reference:

D.-S.Su, P.A.Elkins. Discovery of Isoxazole Amides As Potent and Selective SMYD3 Inhibitors To Be Published.
Page generated: Tue Jul 15 13:58:35 2025

Last articles

Mg in 6O3P
Mg in 6O2R
Mg in 6O2Q
Mg in 6O36
Mg in 6O2P
Mg in 6O1V
Mg in 6O0J
Mg in 6O1E
Mg in 6O0G
Mg in 6NYY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy