Fluorine in PDB 6ogc: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51), PDB code: 6ogc was solved by C.-Y.Lin, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.50 / 1.18
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.275, 68.866, 60.968, 90.00, 100.34, 90.00
R / Rfree (%)	14.3 / 16.1

The binding sites of Fluorine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) (pdb code 6ogc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51), PDB code: 6ogc:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ B:F15 b:10.9 occ:1.00 F1 B:MJ115 0.0 10.9 1.0 CE2 B:MJ115 1.3 9.0 1.0 CD2 B:MJ115 2.3 8.7 1.0 CZ B:MJ115 2.3 8.1 1.0 F2 B:MJ115 2.7 9.6 1.0 OH B:MJ115 2.7 9.3 1.0 CG2 B:VAL100 3.1 8.8 1.0 CE2 B:PHE115 3.1 11.3 1.0 OD1 B:ASP98 3.1 10.0 1.0 CB B:ASP98 3.2 9.9 1.0 CG B:ASP98 3.4 10.6 1.0 CD2 B:PHE115 3.5 10.3 1.0 CE1 B:MJ115 3.6 9.6 1.0 CG2 B:MJ115 3.7 9.4 1.0 CZ B:PHE115 3.7 11.0 1.0 CD1 B:MJ115 4.1 9.6 1.0 CG B:PHE115 4.2 9.0 1.0 CG2 B:THR153 4.3 9.3 1.0 OD2 B:ASP98 4.4 11.7 1.0 CG2 B:THR12 4.4 7.8 1.0 CE1 B:PHE115 4.4 10.4 1.0 OG1 B:THR153 4.5 8.8 1.0 CB B:VAL100 4.6 7.7 1.0 CD1 B:PHE115 4.6 9.6 1.0 CA B:ASP98 4.6 8.7 1.0 CB2 B:MJ115 4.8 9.3 1.0 O B:HOH492 4.8 12.5 1.0 CG2 B:VAL117 4.8 9.1 1.0 CB B:THR153 5.0 8.3 1.0

Fluorine binding site 2 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ B:F15 b:9.6 occ:1.00 F2 B:MJ115 0.0 9.6 1.0 CD2 B:MJ115 1.3 8.7 1.0 CE2 B:MJ115 2.3 9.0 1.0 CG2 B:MJ115 2.4 9.4 1.0 F1 B:MJ115 2.7 10.9 1.0 CB2 B:MJ115 2.7 9.3 1.0 CZ B:PHE115 3.0 11.0 1.0 CG2 B:VAL100 3.4 8.8 1.0 CE2 B:PHE115 3.5 11.3 1.0 NE2 B:GLN19 3.5 9.9 1.0 O B:HOH492 3.6 12.5 1.0 CE1 B:PHE115 3.6 10.4 1.0 CD1 B:MJ115 3.6 9.6 1.0 CZ B:MJ115 3.6 8.1 1.0 NH2 B:ARG46 3.7 7.4 1.0 CA2 B:MJ115 4.1 7.7 1.0 CE1 B:MJ115 4.1 9.6 1.0 CG2 B:THR12 4.2 7.8 1.0 CD2 B:PHE115 4.4 10.3 1.0 CG1 B:VAL100 4.4 8.2 1.0 CB B:THR12 4.5 7.3 1.0 CD1 B:PHE115 4.5 9.6 1.0 CB B:VAL100 4.5 7.7 1.0 CZ B:ARG46 4.6 7.2 1.0 CD B:GLN19 4.6 9.1 1.0 OH B:MJ115 4.7 9.3 1.0 OE1 B:GLN133 4.8 7.7 1.0 C2 B:MJ115 4.8 7.6 1.0 O2 B:MJ115 4.9 7.8 1.0 CG B:PHE115 4.9 9.0 1.0

Fluorine binding site 3 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:F15 b:10.9 occ:0.87 F1 A:MJ115 0.0 10.9 0.9 CE1 A:MJ115 1.2 9.6 0.1 CE2 A:MJ115 1.4 9.4 0.9 CZ A:MJ115 2.2 9.6 0.1 CD1 A:MJ115 2.3 9.6 0.1 CD2 A:MJ115 2.3 8.8 0.9 CZ A:MJ115 2.4 9.6 0.9 OH A:MJ115 2.6 9.4 0.1 F2 A:MJ115 2.7 9.4 0.9 OH A:MJ115 2.8 11.5 0.9 OD2 A:ASP98 3.1 11.8 1.0 CG2 A:VAL100 3.2 15.3 1.0 CB A:ASP98 3.3 11.5 1.0 CG A:ASP98 3.4 11.7 1.0 CE2 A:PHE115 3.4 10.4 1.0 CE2 A:MJ115 3.5 9.9 0.1 CG2 A:MJ115 3.6 9.4 0.1 CG2 A:MJ115 3.7 9.1 0.9 CE1 A:MJ115 3.7 9.8 0.9 CD2 A:PHE115 3.8 11.1 1.0 CD2 A:MJ115 4.0 9.9 0.1 CD1 A:MJ115 4.1 9.6 0.9 CZ A:PHE115 4.2 10.5 1.0 CG2 A:THR12 4.3 8.4 1.0 OD1 A:ASP98 4.3 13.2 1.0 CG2 A:VAL117 4.3 11.2 1.0 CG2 A:THR153 4.5 11.6 1.0 F1 A:MJ115 4.6 10.6 0.1 OG1 A:THR153 4.6 11.2 1.0 CB A:VAL100 4.7 14.0 1.0 CA A:ASP98 4.8 10.5 1.0 CB2 A:MJ115 4.8 9.6 0.9 CB2 A:MJ115 4.8 9.0 0.1 CG A:PHE115 4.8 11.3 1.0 O A:HOH493 4.9 15.1 1.0

Fluorine binding site 4 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:F15 b:10.6 occ:0.13 F1 A:MJ115 0.0 10.6 0.1 CE1 A:MJ115 1.2 9.8 0.9 CE2 A:MJ115 1.4 9.9 0.1 CZ A:MJ115 2.2 9.6 0.9 CD1 A:MJ115 2.3 9.6 0.9 CD2 A:MJ115 2.3 9.9 0.1 CZ A:MJ115 2.5 9.6 0.1 F2 A:MJ115 2.5 10.5 0.1 OH A:MJ115 2.6 11.5 0.9 OH A:MJ115 2.8 9.4 0.1 OG1 A:THR155 3.0 11.1 1.0 CE2 A:PHE95 3.3 13.9 1.0 CE2 A:MJ115 3.5 9.4 0.9 O A:HOH382 3.6 13.9 1.0 OE2 A:GLU172 3.6 13.5 1.0 CG2 A:MJ115 3.6 9.1 0.9 CD A:GLU172 3.6 12.4 1.0 CG2 A:MJ115 3.7 9.4 0.1 CE1 A:MJ115 3.8 9.6 0.1 OE1 A:GLU172 3.9 12.5 1.0 CD2 A:PHE95 4.0 12.0 1.0 OG1 A:THR153 4.0 11.2 1.0 CB A:THR153 4.0 10.3 1.0 CD2 A:MJ115 4.0 8.8 0.9 CZ A:PHE95 4.1 14.2 1.0 CG1 A:VAL11 4.1 8.7 1.0 CD1 A:MJ115 4.2 9.6 0.1 CG A:GLU172 4.2 11.8 1.0 CB A:THR155 4.3 10.8 1.0 CG2 A:THR153 4.4 11.6 1.0 F1 A:MJ115 4.6 10.9 0.9 CG2 A:THR155 4.7 12.4 1.0 OG1 A:MJ115 4.9 9.6 0.9 CB2 A:MJ115 4.9 9.6 0.9 CB2 A:MJ115 4.9 9.0 0.1 OD2 A:ASP98 4.9 11.8 1.0 O A:HOH394 5.0 17.9 1.0

Fluorine binding site 5 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:F15 b:9.4 occ:0.87 F2 A:MJ115 0.0 9.4 0.9 CD1 A:MJ115 1.2 9.6 0.1 CD2 A:MJ115 1.3 8.8 0.9 CE1 A:MJ115 2.2 9.6 0.1 CG2 A:MJ115 2.3 9.4 0.1 CE2 A:MJ115 2.3 9.4 0.9 CG2 A:MJ115 2.4 9.1 0.9 F1 A:MJ115 2.7 10.9 0.9 CB2 A:MJ115 2.7 9.0 0.1 CB2 A:MJ115 2.7 9.6 0.9 CZ A:PHE115 3.2 10.5 1.0 CE2 A:PHE115 3.3 10.4 1.0 CG2 A:VAL100 3.5 15.3 1.0 CD2 A:MJ115 3.5 9.9 0.1 CZ A:MJ115 3.6 9.6 0.1 CD1 A:MJ115 3.7 9.6 0.9 CZ A:MJ115 3.7 9.6 0.9 O A:HOH493 3.7 15.1 1.0 NE2 A:GLN19 3.7 11.0 1.0 NH2 A:ARG46 3.8 8.9 1.0 CE2 A:MJ115 4.0 9.9 0.1 CG2 A:THR12 4.0 8.4 1.0 CE1 A:PHE115 4.1 11.2 1.0 CA2 A:MJ115 4.1 7.5 0.9 CA2 A:MJ115 4.1 8.8 0.1 CE1 A:MJ115 4.2 9.8 0.9 CB A:THR12 4.4 7.3 1.0 CD2 A:PHE115 4.4 11.1 1.0 CG1 A:VAL100 4.6 16.1 1.0 CB A:VAL100 4.6 14.0 1.0 OH A:MJ115 4.6 9.4 0.1 OH A:MJ115 4.7 11.5 0.9 CZ A:ARG46 4.7 8.4 1.0 F2 A:MJ115 4.7 10.5 0.1 C2 A:MJ115 4.9 8.0 0.9 CD A:GLN19 4.9 9.3 1.0 O2 A:MJ115 4.9 8.3 0.9 OE1 A:GLN133 4.9 9.1 1.0 O2 A:MJ115 4.9 8.9 0.1 CD1 A:PHE115 4.9 11.9 1.0 C2 A:MJ115 4.9 8.9 0.1

Fluorine binding site 6 out of 6 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3- F2Y), H148D; Circular Permutant (50-51) within 5.0Å range: probe atom residue distance (Å) B Occ A:F15 b:10.5 occ:0.13 F2 A:MJ115 0.0 10.5 0.1 CD1 A:MJ115 1.2 9.6 0.9 CD2 A:MJ115 1.4 9.9 0.1 CE1 A:MJ115 2.2 9.8 0.9 CE2 A:MJ115 2.3 9.9 0.1 CG2 A:MJ115 2.4 9.1 0.9 CG2 A:MJ115 2.5 9.4 0.1 N2 A:MJ115 2.5 7.2 0.9 F1 A:MJ115 2.5 10.6 0.1 N2 A:MJ115 2.6 8.7 0.1 OE2 A:GLU172 2.7 13.5 1.0 OG1 A:MJ115 2.9 9.6 0.9 CB2 A:MJ115 3.0 9.6 0.9 CB2 A:MJ115 3.0 9.0 0.1 CA2 A:MJ115 3.0 7.5 0.9 CA2 A:MJ115 3.1 8.8 0.1 CD A:GLU172 3.2 12.4 1.0 OG1 A:MJ115 3.2 9.1 0.1 OE1 A:GLU172 3.3 12.5 1.0 O A:HOH394 3.4 17.9 1.0 CZ A:MJ115 3.5 9.6 0.9 CD2 A:MJ115 3.6 8.8 0.9 CZ A:MJ115 3.7 9.6 0.1 C1 A:MJ115 3.7 6.8 0.9 CD1 A:MJ115 3.8 9.6 0.1 C1 A:MJ115 3.8 8.6 0.1 CB1 A:MJ115 4.0 9.2 0.9 CE2 A:MJ115 4.0 9.4 0.9 CG1 A:VAL11 4.0 8.7 1.0 CB1 A:MJ115 4.0 9.1 0.1 O A:VAL11 4.2 7.4 1.0 CE1 A:MJ115 4.2 9.6 0.1 CA A:THR12 4.4 6.8 1.0 C2 A:MJ115 4.4 8.0 0.9 CA1 A:MJ115 4.4 7.5 0.9 CA1 A:MJ115 4.5 8.7 0.1 CG A:GLU172 4.5 11.8 1.0 OH A:MJ115 4.5 11.5 0.9 O A:HOH405 4.6 9.5 1.0 C2 A:MJ115 4.6 8.9 0.1 C A:VAL11 4.7 6.7 1.0 O A:HOH493 4.7 15.1 1.0 N3 A:MJ115 4.7 7.5 0.9 OH A:MJ115 4.7 9.4 0.1 F2 A:MJ115 4.7 9.4 0.9 CG2 A:THR12 4.8 8.4 1.0 N A:THR12 4.8 7.0 1.0 O A:HOH501 4.9 39.6 1.0 N3 A:MJ115 4.9 8.9 0.1 OG1 A:THR155 4.9 11.1 1.0

C.-Y.Lin, A.Deng, S.G.Boxer. Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(2,3-F2Y), H148D; Circular Permutant (50-51) To Be Published.