Fluorine in PDB 6qid: Crystal Structure of Deah-Box Atpase PRP43-S387A

The structure of Crystal Structure of Deah-Box Atpase PRP43-S387A, PDB code: 6qid was solved by F.Hamann, R.Ficner, M.Enders, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.61 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.820, 105.450, 119.230, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 20.8

The structure of Crystal Structure of Deah-Box Atpase PRP43-S387A also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	5 atoms

The binding sites of Fluorine atom in the Crystal Structure of Deah-Box Atpase PRP43-S387A (pdb code 6qid). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Deah-Box Atpase PRP43-S387A, PDB code: 6qid:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Crystal Structure of Deah-Box Atpase PRP43-S387A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Deah-Box Atpase PRP43-S387A within 5.0Å range: probe atom residue distance (Å) B Occ A:F1323 b:21.6 occ:1.00 F1 A:BEF1323 0.0 21.6 1.0 BE A:BEF1323 1.5 20.0 1.0 O A:HOH1622 2.5 22.2 1.0 F2 A:BEF1323 2.6 25.7 1.0 F3 A:BEF1323 2.6 27.9 1.0 NZ A:LYS125 2.7 21.5 1.0 O3B A:ADP1322 3.1 23.8 1.0 O A:HOH1603 3.3 23.7 1.0 O A:HOH1460 3.3 19.0 1.0 CE A:LYS125 3.4 21.0 1.0 CA A:THR121 3.7 18.1 1.0 CG2 A:THR121 3.8 18.5 1.0 PB A:ADP1322 3.9 25.3 1.0 OE2 A:GLU219 3.9 28.8 1.0 CB A:ALA251 3.9 26.3 1.0 O2B A:ADP1322 3.9 21.4 1.0 O1B A:ADP1322 4.0 20.7 1.0 MG A:MG1319 4.1 23.0 1.0 CB A:THR121 4.1 20.9 1.0 O A:GLU120 4.3 26.1 1.0 N A:THR121 4.3 21.1 1.0 N A:GLY122 4.4 18.6 1.0 OE1 A:GLN428 4.4 22.4 1.0 N A:ALA251 4.5 28.3 1.0 C A:GLU120 4.6 26.5 1.0 C A:THR121 4.6 25.0 1.0 NH2 A:ARG432 4.6 19.3 1.0 OE1 A:GLU219 4.7 25.9 1.0 CD A:GLU219 4.7 28.3 1.0 NE2 A:GLN428 4.8 24.7 1.0 CA A:ALA251 4.8 22.3 1.0 CD A:LYS125 4.9 23.3 1.0 O A:GLY119 4.9 20.1 1.0

Fluorine binding site 2 out of 3 in the Crystal Structure of Deah-Box Atpase PRP43-S387A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Deah-Box Atpase PRP43-S387A within 5.0Å range: probe atom residue distance (Å) B Occ A:F1323 b:25.7 occ:1.00 F2 A:BEF1323 0.0 25.7 1.0 BE A:BEF1323 1.5 20.0 1.0 MG A:MG1319 2.1 23.0 1.0 F3 A:BEF1323 2.5 27.9 1.0 F1 A:BEF1323 2.6 21.6 1.0 O A:HOH1603 2.7 23.7 1.0 O A:HOH1460 2.9 19.0 1.0 O2B A:ADP1322 2.9 21.4 1.0 OE2 A:GLU219 2.9 28.8 1.0 O A:HOH1484 2.9 20.9 1.0 O3B A:ADP1322 3.0 23.8 1.0 O A:HOH1524 3.1 19.7 1.0 PB A:ADP1322 3.5 25.3 1.0 CA A:ALA387 3.5 19.5 1.0 N A:ALA387 3.8 24.1 1.0 O A:HOH1622 4.0 22.2 1.0 OG1 A:THR126 4.0 22.7 1.0 CD A:GLU219 4.1 28.3 1.0 O A:ALA387 4.2 19.5 1.0 NH2 A:ARG435 4.3 18.2 1.0 C A:ALA387 4.3 22.3 1.0 CB A:ALA387 4.3 16.8 1.0 O1B A:ADP1322 4.4 20.7 1.0 NH1 A:ARG432 4.5 16.2 1.0 NZ A:LYS125 4.6 21.5 1.0 O3A A:ADP1322 4.6 18.6 1.0 OE1 A:GLU219 4.7 25.9 1.0 NH2 A:ARG432 4.7 19.3 1.0 O2A A:ADP1322 4.7 24.0 1.0 CE A:LYS125 5.0 21.0 1.0 CB A:THR126 5.0 24.9 1.0

Fluorine binding site 3 out of 3 in the Crystal Structure of Deah-Box Atpase PRP43-S387A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Deah-Box Atpase PRP43-S387A within 5.0Å range: probe atom residue distance (Å) B Occ A:F1323 b:27.9 occ:1.00 F3 A:BEF1323 0.0 27.9 1.0 BE A:BEF1323 1.6 20.0 1.0 F2 A:BEF1323 2.5 25.7 1.0 F1 A:BEF1323 2.6 21.6 1.0 NH2 A:ARG432 2.8 19.3 1.0 O3B A:ADP1322 2.9 23.8 1.0 O A:HOH1460 2.9 19.0 1.0 NH1 A:ARG435 2.9 18.3 1.0 NH1 A:ARG432 3.0 16.2 1.0 CZ A:ARG432 3.3 21.8 1.0 NH2 A:ARG435 3.4 18.2 1.0 CZ A:ARG435 3.6 18.5 1.0 CB A:THR121 3.6 20.9 1.0 CA A:THR121 3.7 18.1 1.0 CG2 A:THR121 3.7 18.5 1.0 N A:GLY122 3.8 18.6 1.0 PB A:ADP1322 4.1 25.3 1.0 C A:THR121 4.2 25.0 1.0 N A:ALA387 4.2 24.1 1.0 OE1 A:GLN428 4.4 22.4 1.0 O2B A:ADP1322 4.4 21.4 1.0 CA A:ALA387 4.4 19.5 1.0 MG A:MG1319 4.5 23.0 1.0 O A:HOH1622 4.5 22.2 1.0 O A:GLY431 4.5 21.2 1.0 O A:HOH1484 4.6 20.9 1.0 NE A:ARG432 4.6 24.5 1.0 OE2 A:GLU219 4.8 28.8 1.0 C A:ALA387 4.8 22.3 1.0 NE A:ARG435 4.8 19.8 1.0 O A:ALA387 4.8 19.5 1.0 CA A:GLY122 4.9 23.8 1.0 OG1 A:THR121 4.9 19.8 1.0 O A:HOH1603 4.9 23.7 1.0 O1B A:ADP1322 4.9 20.7 1.0 O3A A:ADP1322 5.0 18.6 1.0 NZ A:LYS125 5.0 21.5 1.0

F.Hamann, M.Enders, R.Ficner. Structural Basis For Rna Translocation By Deah-Box Atpases. Nucleic Acids Res. V. 47 4349 2019.
ISSN: ESSN 1362-4962
PubMed: 30828714
DOI: 10.1093/NAR/GKZ150