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Fluorine in PDB 6ql8: Cathepsin-K in Complex with Miv-711

Enzymatic activity of Cathepsin-K in Complex with Miv-711

All present enzymatic activity of Cathepsin-K in Complex with Miv-711:
3.4.22.38;

Protein crystallography data

The structure of Cathepsin-K in Complex with Miv-711, PDB code: 6ql8 was solved by D.J.Derbyshire, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.91 / 1.80
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 70.910, 70.910, 54.270, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 18.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cathepsin-K in Complex with Miv-711 (pdb code 6ql8). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Cathepsin-K in Complex with Miv-711, PDB code: 6ql8:

Fluorine binding site 1 out of 1 in 6ql8

Go back to Fluorine Binding Sites List in 6ql8
Fluorine binding site 1 out of 1 in the Cathepsin-K in Complex with Miv-711


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cathepsin-K in Complex with Miv-711 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:16.6
occ:1.00
F33 A:J5N301 0.0 16.6 1.0
C29 A:J5N301 1.4 12.8 1.0
C28 A:J5N301 2.5 12.7 1.0
S30 A:J5N301 2.7 15.2 1.0
O A:HOH488 2.9 24.5 1.0
C24 A:J5N301 3.0 11.3 1.0
ND2 A:ASN70 3.1 12.0 1.0
C25 A:J5N301 3.2 11.2 1.0
CD2 A:TYR67 3.3 13.3 1.0
OD1 A:ASN60 3.6 10.5 1.0
CE2 A:TYR67 3.6 14.4 1.0
N32 A:J5N301 3.7 12.3 1.0
C31 A:J5N301 3.8 14.2 1.0
O A:GLU59 4.2 17.2 1.0
C23 A:J5N301 4.3 10.5 1.0
CG A:TYR67 4.4 11.5 1.0
CG A:ASN70 4.4 13.7 1.0
OE2 A:GLU59 4.5 28.7 1.0
CA A:ASN60 4.5 12.5 1.0
C26 A:J5N301 4.6 11.8 1.0
C A:GLU59 4.6 15.8 1.0
CG A:ASN60 4.7 10.8 1.0
N A:TYR67 4.8 11.2 1.0
O A:HOH420 4.8 18.5 1.0
N A:ASN60 4.9 13.2 1.0
CB A:TYR67 4.9 11.2 1.0
CZ A:TYR67 4.9 13.6 1.0
CG A:GLU59 4.9 26.6 1.0
CD A:GLU59 5.0 30.2 1.0

Reference:

D.J.Derbyshire, D.J.Derbyshire. N/A N/A.
Page generated: Fri Aug 2 00:56:46 2024

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