Atomistry » Fluorine » PDB 6tvl-6ugr » 6tvl
Atomistry »
  Fluorine »
    PDB 6tvl-6ugr »
      6tvl »

Fluorine in PDB 6tvl: Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound

Enzymatic activity of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound

All present enzymatic activity of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound, PDB code: 6tvl was solved by L.Chiniadis, P.Giastas, I.Bratsos, A.Papakyriakou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.45 / 1.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.270, 79.270, 35.910, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 24.3

Other elements in 6tvl:

The structure of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound (pdb code 6tvl). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound, PDB code: 6tvl:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6tvl

Go back to Fluorine Binding Sites List in 6tvl
Fluorine binding site 1 out of 3 in the Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F204

b:56.4
occ:0.91
 FAC A:TFS204 0.0 56.4 0.9
CAD A:TFS204 1.4 54.0 0.9
FAA A:TFS204 2.1 55.3 0.9
FAG A:TFS204 2.2 55.0 0.9
SAE A:TFS204 2.8 44.3 0.9
OAH A:TFS204 3.1 55.5 0.9
OAB A:TFS204 3.2 55.0 0.9
OAF A:TFS204 4.1 51.9 0.9
CH2 A:TRP123 4.3 33.5 1.0
CZ2 A:TRP123 4.5 31.0 1.0
CZ3 A:TRP123 4.8 32.5 1.0
CE2 A:TRP123 5.0 31.2 1.0

Fluorine binding site 2 out of 3 in 6tvl

Go back to Fluorine Binding Sites List in 6tvl
Fluorine binding site 2 out of 3 in the Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F204

b:55.0
occ:0.91
 FAG A:TFS204 0.0 55.0 0.9
CAD A:TFS204 1.4 54.0 0.9
FAA A:TFS204 2.2 55.3 0.9
FAC A:TFS204 2.2 56.4 0.9
SAE A:TFS204 2.8 44.3 0.9
OAH A:TFS204 3.2 55.5 0.9
OAF A:TFS204 3.3 51.9 0.9
OAB A:TFS204 4.0 55.0 0.9
O A:HOH398 4.6 28.8 1.0
CH2 A:TRP123 4.8 33.5 1.0
CZ3 A:TRP123 4.9 32.5 1.0

Fluorine binding site 3 out of 3 in 6tvl

Go back to Fluorine Binding Sites List in 6tvl
Fluorine binding site 3 out of 3 in the Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F204

b:55.3
occ:0.91
 FAA A:TFS204 0.0 55.3 0.9
CAD A:TFS204 1.3 54.0 0.9
FAC A:TFS204 2.1 56.4 0.9
FAG A:TFS204 2.2 55.0 0.9
SAE A:TFS204 2.7 44.3 0.9
OAB A:TFS204 3.1 55.0 0.9
OAF A:TFS204 3.5 51.9 0.9
OAH A:TFS204 3.9 55.5 0.9

Reference:

L.Chiniadis, I.Bratsos, K.Bethanis, M.Karpusas, P.Giastas, A.Papakyriakou. High-Resolution Crystal Structures of A "Half Sandwich"-Type Ru(II) Coordination Compound Bound to Hen Egg-White Lysozyme and Proteinase K. J.Biol.Inorg.Chem. 2020.
ISSN: ESSN 1432-1327
PubMed: 32266561
DOI: 10.1007/S00775-020-01786-Z
Page generated: Tue Jul 15 16:06:27 2025

Last articles

Mn in 7ATN
Mn in 7ATE
Mn in 6ZEJ
Mn in 7AHX
Mn in 7ABO
Mn in 7ABN
Mn in 7A16
Mn in 7A15
Mn in 7A14
Mn in 7A13
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy