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Fluorine in PDB 6txp: Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid)

Enzymatic activity of Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid)

All present enzymatic activity of Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid):
1.1.1.21; 1.1.1.300; 1.1.1.372; 1.1.1.54;

Protein crystallography data

The structure of Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid), PDB code: 6txp was solved by L.-S.Hubert, M.Ley, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.43 / 0.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.314, 66.899, 49.232, 90, 92.26, 90
R / Rfree (%) 11.5 / 12.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid) (pdb code 6txp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid), PDB code: 6txp:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6txp

Go back to Fluorine Binding Sites List in 6txp
Fluorine binding site 1 out of 3 in the Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:9.5
occ:0.68
F27 A:4G7402 0.0 9.5 0.7
F27 A:4G7402 0.6 7.2 0.3
C26 A:4G7402 1.2 7.3 0.3
C26 A:4G7402 1.4 8.2 0.7
C24 A:4G7402 1.8 8.0 0.3
C28 A:4G7402 2.3 6.8 0.7
C24 A:4G7402 2.4 8.9 0.7
C28 A:4G7402 2.4 7.1 0.3
HG13 A:VAL47 2.8 5.7 1.0
HD1 A:TYR48 2.9 5.0 1.0
O A:VAL47 3.1 5.0 1.0
C22 A:4G7402 3.2 8.4 0.3
HA A:TYR48 3.2 5.1 1.0
HG22 A:VAL47 3.2 6.5 1.0
HE1 A:TRP20 3.4 6.6 1.0
O A:HOH915 3.4 10.6 1.0
C30 A:4G7402 3.5 7.5 0.3
O A:HOH738 3.5 16.2 1.0
O A:HOH563 3.6 7.1 1.0
C30 A:4G7402 3.6 6.1 0.7
C22 A:4G7402 3.6 8.6 0.7
HD1 A:TRP20 3.6 6.1 1.0
C A:VAL47 3.7 4.4 1.0
CG1 A:VAL47 3.7 4.8 1.0
CD1 A:TYR48 3.7 4.1 1.0
NE1 A:TRP20 3.7 5.5 1.0
C21 A:4G7402 3.8 8.3 0.3
CD1 A:TRP20 3.9 5.1 1.0
CG2 A:VAL47 4.0 5.4 1.0
HE1 A:TYR48 4.0 4.9 1.0
CA A:TYR48 4.1 4.3 1.0
HG11 A:VAL47 4.1 5.7 1.0
C21 A:4G7402 4.1 7.5 0.7
N A:TYR48 4.1 3.9 1.0
HG21 A:VAL47 4.1 6.5 1.0
O A:HOH835 4.1 28.0 1.0
CB A:VAL47 4.3 4.7 1.0
HG12 A:VAL47 4.3 5.7 1.0
CE1 A:TYR48 4.3 4.1 1.0
CA A:VAL47 4.6 4.3 1.0
O A:HOH953 4.7 10.1 1.0
CE2 A:TRP20 4.8 5.4 1.0
O31 A:4G7402 4.8 7.6 0.3
CG A:TYR48 4.8 4.2 1.0
O31 A:4G7402 4.8 5.5 0.7
H A:TYR48 4.8 4.7 1.0
HG23 A:VAL47 4.8 6.5 1.0
O A:HOH678 4.9 7.7 1.0
CB A:TYR48 5.0 4.2 1.0
CG A:TRP20 5.0 4.7 1.0

Fluorine binding site 2 out of 3 in 6txp

Go back to Fluorine Binding Sites List in 6txp
Fluorine binding site 2 out of 3 in the Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:7.2
occ:0.32
F27 A:4G7402 0.0 7.2 0.3
F27 A:4G7402 0.6 9.5 0.7
C26 A:4G7402 1.4 7.3 0.3
C26 A:4G7402 1.7 8.2 0.7
C28 A:4G7402 2.3 7.1 0.3
C28 A:4G7402 2.3 6.8 0.7
C24 A:4G7402 2.4 8.0 0.3
HD1 A:TYR48 2.4 5.0 1.0
HA A:TYR48 2.9 5.1 1.0
C24 A:4G7402 2.9 8.9 0.7
HG13 A:VAL47 2.9 5.7 1.0
HD1 A:TRP20 3.0 6.1 1.0
HE1 A:TRP20 3.0 6.6 1.0
CD1 A:TYR48 3.3 4.1 1.0
NE1 A:TRP20 3.3 5.5 1.0
CD1 A:TRP20 3.3 5.1 1.0
O A:VAL47 3.3 5.0 1.0
O A:HOH738 3.5 16.2 1.0
C30 A:4G7402 3.6 7.5 0.3
C22 A:4G7402 3.6 8.4 0.3
HE1 A:TYR48 3.7 4.9 1.0
O A:HOH915 3.7 10.6 1.0
C30 A:4G7402 3.7 6.1 0.7
HG22 A:VAL47 3.7 6.5 1.0
CA A:TYR48 3.8 4.3 1.0
C A:VAL47 3.8 4.4 1.0
O A:HOH835 3.8 28.0 1.0
CG1 A:VAL47 3.9 4.8 1.0
CE1 A:TYR48 3.9 4.1 1.0
N A:TYR48 4.0 3.9 1.0
O A:HOH563 4.0 7.1 1.0
C22 A:4G7402 4.1 8.6 0.7
C21 A:4G7402 4.1 8.3 0.3
HG11 A:VAL47 4.3 5.7 1.0
CG A:TYR48 4.3 4.2 1.0
HG12 A:VAL47 4.3 5.7 1.0
CE2 A:TRP20 4.4 5.4 1.0
CG A:TRP20 4.4 4.7 1.0
O A:HOH678 4.4 7.7 1.0
C21 A:4G7402 4.4 7.5 0.7
CG2 A:VAL47 4.5 5.4 1.0
CB A:TYR48 4.5 4.2 1.0
CB A:VAL47 4.6 4.7 1.0
H A:TYR48 4.6 4.7 1.0
HG21 A:VAL47 4.6 6.5 1.0
HB3 A:TYR48 4.7 5.1 1.0
O31 A:4G7402 4.7 7.6 0.3
O31 A:4G7402 4.7 5.5 0.7
C A:TYR48 4.8 4.3 1.0
CA A:VAL47 4.8 4.3 1.0
C32 A:4G7402 4.9 7.3 0.3
C32 A:4G7402 4.9 4.7 0.7
CD2 A:TRP20 4.9 5.0 1.0

Fluorine binding site 3 out of 3 in 6txp

Go back to Fluorine Binding Sites List in 6txp
Fluorine binding site 3 out of 3 in the Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:26.3
occ:0.70
F27 A:4G7403 0.0 26.3 0.7
C26 A:4G7403 1.4 26.0 0.7
C28 A:4G7403 2.3 25.8 0.7
C24 A:4G7403 2.3 26.1 0.7
HB2 A:TRP219 3.3 13.1 1.0
HB3 A:TRP219 3.4 13.1 1.0
C30 A:4G7403 3.6 25.6 0.7
C22 A:4G7403 3.6 26.1 0.7
CB A:TRP219 3.8 10.9 1.0
C21 A:4G7403 4.1 26.1 0.7
HA A:TRP219 4.6 12.9 1.0
O31 A:4G7403 4.7 24.9 0.7
CG A:TRP219 4.8 10.2 1.0
CA A:TRP219 4.8 10.8 1.0
O35 A:4G7403 4.9 23.6 0.7
C32 A:4G7403 5.0 24.5 0.7

Reference:

L.-S.Hubert, M.Ley, F.Scheer, W.Diederich, A.Heine, G.Klebe. Human Aldose Reductase Mutant L300A in Complex with A Ligand with An Idd Structure (3-({[2-(Carboxymethoxy)-4-Fluorobenzoyl]Amino}Methyl) Benzoic Acid) To Be Published.
Page generated: Tue Jul 15 16:06:27 2025

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