Fluorine in PDB 6uxw: Swi/Snf Nucleosome Complex with Adp-Befx

The structure of Swi/Snf Nucleosome Complex with Adp-Befx also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Swi/Snf Nucleosome Complex with Adp-Befx (pdb code 6uxw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Swi/Snf Nucleosome Complex with Adp-Befx, PDB code: 6uxw:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Swi/Snf Nucleosome Complex with Adp-Befx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Swi/Snf Nucleosome Complex with Adp-Befx within 5.0Å range: probe atom residue distance (Å) B Occ A:F1803 b:55.0 occ:1.00 F1 A:BEF1803 0.0 55.0 1.0 BE A:BEF1803 1.7 53.2 1.0 O3B A:ADP1802 2.4 47.3 1.0 F3 A:BEF1803 2.6 51.3 1.0 F2 A:BEF1803 2.8 55.7 1.0 MG A:MG1804 3.1 21.3 1.0 PB A:ADP1802 3.6 47.3 1.0 NH2 A:ARG1196 3.7 0.6 1.0 O1A A:ADP1802 3.7 47.3 1.0 O2B A:ADP1802 3.8 47.3 1.0 NH1 A:ARG1196 3.9 0.6 1.0 CZ A:ARG1196 4.0 0.6 1.0 O3A A:ADP1802 4.5 47.3 1.0 NH1 A:ARG1199 4.5 0.2 1.0 O1B A:ADP1802 4.7 47.3 1.0 PA A:ADP1802 4.7 47.3 1.0 NH2 A:ARG1199 4.8 0.2 1.0 NE A:ARG1196 4.9 0.6 1.0 OE2 A:GLU895 5.0 0.9 1.0

Fluorine binding site 2 out of 3 in the Swi/Snf Nucleosome Complex with Adp-Befx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Swi/Snf Nucleosome Complex with Adp-Befx within 5.0Å range: probe atom residue distance (Å) B Occ A:F1803 b:55.7 occ:1.00 F2 A:BEF1803 0.0 55.7 1.0 BE A:BEF1803 1.7 53.2 1.0 NH2 A:ARG1199 2.2 0.2 1.0 NH2 A:ARG1196 2.5 0.6 1.0 F3 A:BEF1803 2.7 51.3 1.0 F1 A:BEF1803 2.8 55.0 1.0 CZ A:ARG1196 2.9 0.6 1.0 CZ A:ARG1199 3.1 0.2 1.0 NE A:ARG1196 3.2 0.6 1.0 NH1 A:ARG1199 3.2 0.2 1.0 CD A:ARG1196 3.3 0.6 1.0 O A:LEU1170 3.7 0.0 1.0 NH1 A:ARG1196 3.8 0.6 1.0 O3B A:ADP1802 4.1 47.3 1.0 NE A:ARG1199 4.3 0.2 1.0 O1A A:ADP1802 4.4 47.3 1.0 CG A:ASN1171 4.5 0.3 1.0 CA A:ASN1171 4.5 0.5 1.0 CG A:ARG1196 4.6 0.6 1.0 OD1 A:ASN1171 4.6 0.9 1.0 CB A:ASN1171 4.7 0.5 1.0 ND2 A:ASN1171 4.7 0.4 1.0 C A:LEU1170 4.8 0.6 1.0 CA A:ARG1196 4.9 0.6 1.0

Fluorine binding site 3 out of 3 in the Swi/Snf Nucleosome Complex with Adp-Befx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Swi/Snf Nucleosome Complex with Adp-Befx within 5.0Å range: probe atom residue distance (Å) B Occ A:F1803 b:51.3 occ:1.00 F3 A:BEF1803 0.0 51.3 1.0 BE A:BEF1803 1.7 53.2 1.0 O3B A:ADP1802 2.2 47.3 1.0 O1A A:ADP1802 2.2 47.3 1.0 NH1 A:ARG1199 2.3 0.2 1.0 F1 A:BEF1803 2.6 55.0 1.0 F2 A:BEF1803 2.7 55.7 1.0 O3A A:ADP1802 3.1 47.3 1.0 PA A:ADP1802 3.1 47.3 1.0 CZ A:ARG1199 3.2 0.2 1.0 PB A:ADP1802 3.2 47.3 1.0 NH2 A:ARG1199 3.4 0.2 1.0 ND2 A:ASN1171 3.4 0.4 1.0 O5' A:ADP1802 3.8 47.3 1.0 CG A:ASN1171 3.9 0.3 1.0 O2B A:ADP1802 3.9 47.3 1.0 N A:GLY795 4.0 0.7 1.0 OD1 A:ASN1171 4.2 0.9 1.0 CA A:GLY795 4.2 0.4 1.0 NE A:ARG1199 4.3 0.2 1.0 O1B A:ADP1802 4.4 47.3 1.0 O2A A:ADP1802 4.5 47.3 1.0 NH2 A:ARG1196 4.8 0.6 1.0 CB A:ASN1171 4.8 0.5 1.0 MG A:MG1804 4.8 21.3 1.0 C5' A:ADP1802 4.8 47.3 1.0 CD A:ARG1199 4.9 0.2 1.0

Y.Han, A.A.Reyes, S.Malik, Y.He. Cryo-Em Structure of Swi/Snf Complex Bound to A Nucleosome Nature 2020.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-020-2087-1