Fluorine in PDB 6w4k: Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011

The structure of Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011, PDB code: 6w4k was solved by D.J.Hosfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.27 / 2.93
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	121.655, 178.510, 236.049, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 23.5

The binding sites of Fluorine atom in the Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011 (pdb code 6w4k). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011, PDB code: 6w4k:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011 within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:72.6 occ:1.00 F13 A:V0Y901 0.0 72.6 1.0 C11 A:V0Y901 1.4 59.7 1.0 C10 A:V0Y901 2.3 67.5 1.0 C12 A:V0Y901 2.4 51.5 1.0 C14 A:V0Y901 2.5 73.9 1.0 O4 A:FAD902 3.0 77.0 1.0 CG2 A:VAL333 3.1 72.8 1.0 N15 A:V0Y901 3.2 65.5 1.0 CG A:MET332 3.3 84.6 1.0 CE A:MET332 3.5 0.3 1.0 C9 A:V0Y901 3.6 63.1 1.0 CB A:VAL333 3.6 75.2 1.0 C7 A:V0Y901 3.7 64.3 1.0 C4 A:FAD902 4.0 75.5 1.0 N A:VAL333 4.1 61.8 1.0 C8 A:V0Y901 4.1 64.4 1.0 SD A:MET332 4.2 87.9 1.0 CZ A:PHE538 4.2 76.7 1.0 N5 A:FAD902 4.3 75.7 1.0 CZ2 A:TRP695 4.5 84.1 1.0 CA A:VAL333 4.5 69.0 1.0 N A:MET332 4.6 78.4 1.0 C A:MET332 4.6 73.4 1.0 CB A:MET332 4.7 88.2 1.0 CH2 A:TRP695 4.7 96.2 1.0 C4X A:FAD902 4.7 76.5 1.0 CE1 A:PHE538 4.7 87.8 1.0 CG1 A:VAL333 4.8 81.6 1.0 C21 A:V0Y901 4.9 82.7 1.0 CA A:MET332 4.9 81.6 1.0 C20 A:V0Y901 4.9 78.6 1.0

Fluorine binding site 2 out of 2 in the Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Lysine Specific Demethylase 1 (LSD1) with Cc- 90011 within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:87.1 occ:1.00 F22 A:V0Y901 0.0 87.1 1.0 C18 A:V0Y901 1.4 94.0 1.0 C19 A:V0Y901 2.4 84.6 1.0 C17 A:V0Y901 2.4 92.0 1.0 C24 A:V0Y901 2.8 0.4 1.0 O23 A:V0Y901 2.9 81.3 1.0 CB A:HIS564 3.0 71.9 1.0 ND1 A:HIS564 3.2 73.3 1.0 CG A:HIS564 3.5 71.4 1.0 C20 A:V0Y901 3.6 78.6 1.0 CD1 A:ILE356 3.6 0.5 1.0 C16 A:V0Y901 3.7 78.5 1.0 CG1 A:VAL333 4.0 81.6 1.0 C21 A:V0Y901 4.1 82.7 1.0 OE1 A:GLN358 4.2 98.9 1.0 CA A:HIS564 4.4 76.9 1.0 CE1 A:HIS564 4.4 75.4 1.0 CG2 A:VAL333 4.5 72.8 1.0 NE2 A:GLN358 4.6 0.6 1.0 CD A:GLN358 4.7 0.1 1.0 OG1 A:THR335 4.8 89.2 1.0 C A:HIS564 4.8 75.2 1.0 CD2 A:HIS564 4.9 64.9 1.0 CB A:VAL333 4.9 75.2 1.0 CG1 A:ILE356 5.0 96.9 1.0 CH2 A:TRP695 5.0 96.2 1.0

D.J.Hosfield, D.J.Hosfield. N/A N/A.