Fluorine in PDB 6ycv: 2'-F-Riboguanosine and Lna Modified Hybrid Type G-Quadruplex with V- Loop

The binding sites of Fluorine atom in the 2'-F-Riboguanosine and Lna Modified Hybrid Type G-Quadruplex with V- Loop (pdb code 6ycv). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the 2'-F-Riboguanosine and Lna Modified Hybrid Type G-Quadruplex with V- Loop, PDB code: 6ycv:

Fluorine binding site 1 out of 1 in the 2'-F-Riboguanosine and Lna Modified Hybrid Type G-Quadruplex with V- Loop


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of 2'-F-Riboguanosine and Lna Modified Hybrid Type G-Quadruplex with V- Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:F14 b:0.0 occ:1.00 F A:GF214 0.0 0.0 1.0 C2' A:GF214 1.4 0.0 1.0 H2' A:GF214 2.0 0.0 1.0 H1' A:GF214 2.3 0.0 1.0 C1' A:GF214 2.4 0.0 1.0 C3' A:GF214 2.4 0.0 1.0 O3' A:GF214 2.7 0.0 1.0 H4' A:GF214 3.0 0.0 1.0 C4' A:GF214 3.1 0.0 1.0 O5' A:DG1 3.2 0.0 1.0 H3' A:GF214 3.3 0.0 1.0 O4' A:GF214 3.3 0.0 1.0 N9 A:GF214 3.4 0.0 1.0 H22 A:DG1 3.5 0.0 1.0 O5' A:LCG15 3.5 0.0 1.0 H5' A:DG1 3.6 0.0 1.0 P A:LCG15 3.8 0.0 1.0 C5' A:DG1 3.8 0.0 1.0 HO5' A:DG1 3.8 0.0 1.0 H5'' A:DG1 3.9 0.0 1.0 C4 A:GF214 4.3 0.0 1.0 C8 A:GF214 4.3 0.0 1.0 N2 A:DG1 4.3 0.0 1.0 H8 A:GF214 4.4 0.0 1.0 N3 A:GF214 4.5 0.0 1.0 C5' A:GF214 4.6 0.0 1.0 O4' A:LCG15 4.7 0.0 1.0 OP1 A:LCG15 4.7 0.0 1.0 OP2 A:LCG15 4.7 0.0 1.0 H6'2 A:LCG15 4.7 0.0 1.0 H21 A:DG1 4.7 0.0 1.0 C5' A:LCG15 4.7 0.0 1.0 H8 A:DG16 4.8 0.0 1.0 H5'A A:GF214 4.9 0.0 1.0

L.Haase, K.Weisz. Locked Nucleic Acid Building Blocks As Versatile Tools For Advanced G-Quadruplex Design. Nucleic Acids Res. V. 48 10555 2020.
ISSN: ESSN 1362-4962
PubMed: 32890406
DOI: 10.1093/NAR/GKAA720