Atomistry » Fluorine » PDB 6y8n-6yhb » 6yea
Atomistry »
  Fluorine »
    PDB 6y8n-6yhb »
      6yea »

Fluorine in PDB 6yea: Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp

Protein crystallography data

The structure of Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp, PDB code: 6yea was solved by E.Boura, M.Smola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.09 / 2.81
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 110.948, 110.948, 35.586, 90, 90, 90
R / Rfree (%) 20.8 / 23.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp (pdb code 6yea). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp, PDB code: 6yea:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6yea

Go back to Fluorine Binding Sites List in 6yea
Fluorine binding site 1 out of 2 in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:39.8
occ:0.50
F6 A:OOE401 0.0 39.8 0.5
C16 A:OOE401 1.4 40.8 0.5
H16 A:OOE401 2.0 49.1 0.5
C15 A:OOE401 2.3 39.4 0.5
C17 A:OOE401 2.4 43.7 0.5
H17 A:OOE401 2.6 52.6 0.5
O7 A:OOE401 2.7 46.5 0.5
H18 A:OOE401 2.8 49.7 0.5
C18 A:OOE401 2.9 41.3 0.5
O5 A:OOE401 2.9 37.9 0.5
H15 A:OOE401 3.3 47.4 0.5
N6 A:OOE401 3.6 43.3 0.5
P A:OOE401 3.9 37.3 0.5
O A:OOE401 4.0 40.2 0.5
C11 A:OOE401 4.2 42.7 0.5
N5 A:OOE401 4.3 47.3 0.5
C19 A:OOE401 4.4 39.8 0.5
O3 A:OOE401 4.7 38.5 0.5
C14 A:OOE401 4.7 45.8 0.5
H191 A:OOE401 4.7 48.0 0.5
H192 A:OOE401 4.9 48.0 0.5
H14 A:OOE401 4.9 55.1 0.5
O A:HOH502 5.0 28.8 1.0

Fluorine binding site 2 out of 2 in 6yea

Go back to Fluorine Binding Sites List in 6yea
Fluorine binding site 2 out of 2 in the Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:40.4
occ:0.50
F9 A:OOE401 0.0 40.4 0.5
C6 A:OOE401 1.4 42.4 0.5
H6 A:OOE401 2.0 51.0 0.5
C5 A:OOE401 2.3 39.5 0.5
C7 A:OOE401 2.4 44.1 0.5
H7 A:OOE401 2.6 53.1 0.5
O10 A:OOE401 2.7 43.5 0.5
H8 A:OOE401 2.8 47.1 0.5
C8 A:OOE401 2.9 39.1 0.5
O1 A:OOE401 2.9 37.9 0.5
CD A:PRO264 3.0 33.2 1.0
H5 A:OOE401 3.3 47.6 0.5
CG A:PRO264 3.3 35.8 1.0
CB A:THR263 3.3 48.4 1.0
CD1 A:TYR163 3.4 36.3 1.0
N2 A:OOE401 3.6 44.2 0.5
CE1 A:TYR163 3.6 47.7 1.0
OG1 A:THR263 3.7 49.2 1.0
N A:PRO264 3.9 34.9 1.0
P1 A:OOE401 3.9 37.1 0.5
O22 A:OOE401 4.0 39.2 0.5
C1 A:OOE401 4.2 42.8 0.5
N1 A:OOE401 4.2 47.1 0.5
CA A:THR263 4.2 38.5 1.0
CG2 A:THR263 4.3 39.4 1.0
N A:THR263 4.4 41.0 1.0
C9 A:OOE401 4.4 39.3 0.5
C A:THR263 4.4 45.8 1.0
CG A:TYR163 4.6 43.5 1.0
O4 A:OOE401 4.6 38.4 0.5
CB A:PRO264 4.7 33.0 1.0
C4 A:OOE401 4.7 45.6 0.5
H92 A:OOE401 4.7 47.3 0.5
CA A:PRO264 4.8 42.0 1.0
H91 A:OOE401 4.9 47.3 0.5
H4 A:OOE401 5.0 54.9 0.5
CZ A:TYR163 5.0 45.0 1.0
CA A:TYR163 5.0 31.5 1.0

Reference:

E.Boura, M.Smola. Human Wtsting in Complex with 2',2'-Difluoro-3',3'-Cgamp To Be Published.
Page generated: Fri Aug 2 04:30:15 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy