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Fluorine in PDB 6yh9: Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide

Enzymatic activity of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide

All present enzymatic activity of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide, PDB code: 6yh9 was solved by A.Smirnov, E.Manakova, S.Grazulis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.62 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.734, 40.869, 70.92, 90, 103.34, 90
R / Rfree (%) 16.6 / 20.4

Other elements in 6yh9:

The structure of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide (pdb code 6yh9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide, PDB code: 6yh9:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6yh9

Go back to Fluorine Binding Sites List in 6yh9
Fluorine binding site 1 out of 3 in the Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:26.7
occ:1.00
F12 A:WWX302 0.0 26.7 1.0
C7 A:WWX302 1.4 26.5 1.0
C6 A:WWX302 2.3 22.0 1.0
C8 A:WWX302 2.4 26.0 1.0
F11 A:WWX302 2.6 23.5 1.0
S14 A:WWX302 2.9 34.8 1.0
O16 A:WWX302 2.9 37.0 1.0
C17 A:WWX302 3.2 35.8 1.0
O A:HOH420 3.2 35.9 1.0
C18 A:WWX302 3.4 32.5 1.0
C5 A:WWX302 3.6 21.3 1.0
C9 A:WWX302 3.7 25.1 1.0
CG2 A:THR200 3.7 17.5 1.0
CD2 A:HIS94 4.1 16.0 1.0
C10 A:WWX302 4.1 23.0 1.0
OG1 A:THR200 4.1 20.6 1.0
NE2 A:HIS94 4.2 11.4 1.0
CB A:SER65 4.2 18.0 1.0
O20 A:WWX302 4.4 42.3 1.0
O15 A:WWX302 4.4 34.2 1.0
CG A:HIS94 4.4 10.8 1.0
CE1 A:HIS94 4.5 11.4 1.0
CB A:THR200 4.5 17.7 1.0
CE1 A:HIS96 4.6 12.2 1.0
ND1 A:HIS94 4.6 12.9 1.0
N19 A:WWX302 4.8 25.2 1.0
CB A:HIS64 4.9 21.9 1.0
ND2 A:ASN62 4.9 26.0 1.0
ZN A:ZN301 5.0 13.2 1.0

Fluorine binding site 2 out of 3 in 6yh9

Go back to Fluorine Binding Sites List in 6yh9
Fluorine binding site 2 out of 3 in the Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:23.5
occ:1.00
F11 A:WWX302 0.0 23.5 1.0
C6 A:WWX302 1.3 22.0 1.0
C7 A:WWX302 2.3 26.5 1.0
C5 A:WWX302 2.4 21.3 1.0
F12 A:WWX302 2.6 26.7 1.0
N4 A:WWX302 2.6 20.6 1.0
ZN A:ZN301 2.8 13.2 1.0
CE1 A:HIS96 2.9 12.2 1.0
NE2 A:HIS94 3.1 11.4 1.0
NE2 A:HIS96 3.1 12.1 1.0
S1 A:WWX302 3.1 23.9 1.0
CG2 A:THR200 3.3 17.5 1.0
C8 A:WWX302 3.6 26.0 1.0
CD2 A:HIS94 3.6 16.0 1.0
C10 A:WWX302 3.7 23.0 1.0
CE1 A:HIS94 3.7 11.4 1.0
OG1 A:THR200 3.8 20.6 1.0
O A:HOH420 3.8 35.9 1.0
OG1 A:THR199 3.9 11.7 1.0
CB A:THR200 4.1 17.7 1.0
C9 A:WWX302 4.2 25.1 1.0
ND1 A:HIS96 4.2 12.3 1.0
O2 A:WWX302 4.2 23.3 1.0
O3 A:WWX302 4.2 25.1 1.0
CD2 A:HIS96 4.5 12.7 1.0
CG A:HIS94 4.5 10.8 1.0
ND1 A:HIS94 4.5 12.9 1.0
N A:THR200 4.7 15.5 1.0
O A:HOH430 4.7 16.0 1.0
F13 A:WWX302 4.8 25.0 1.0
ND1 A:HIS119 4.8 13.4 1.0
OH A:TYR7 5.0 17.6 1.0
S14 A:WWX302 5.0 34.8 1.0
CG A:HIS96 5.0 11.1 1.0

Fluorine binding site 3 out of 3 in 6yh9

Go back to Fluorine Binding Sites List in 6yh9
Fluorine binding site 3 out of 3 in the Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6- Trifluoro-5-{[(1R,2S)-2-Hydroxy-1,2-Diphenylethyl]Amino}-4-[(2- Hydroxyethyl)Sulfonyl]Benzenesulfonamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:25.0
occ:1.00
F13 A:WWX302 0.0 25.0 1.0
C10 A:WWX302 1.3 23.0 1.0
C5 A:WWX302 2.4 21.3 1.0
C9 A:WWX302 2.4 25.1 1.0
N19 A:WWX302 2.8 25.2 1.0
C21 A:WWX302 2.9 26.3 1.0
S1 A:WWX302 3.0 23.9 1.0
O2 A:WWX302 3.1 23.3 1.0
C30 A:WWX302 3.4 25.2 1.0
CD2 A:LEU198 3.4 18.3 1.0
O3 A:WWX302 3.4 25.1 1.0
C6 A:WWX302 3.6 22.0 1.0
C8 A:WWX302 3.6 26.0 1.0
C35 A:WWX302 3.7 26.0 1.0
C7 A:WWX302 4.1 26.5 1.0
C31 A:WWX302 4.2 28.7 1.0
CG2 A:VAL121 4.3 13.6 1.0
C22 A:WWX302 4.4 27.9 1.0
CE1 A:HIS94 4.4 11.4 1.0
O A:HOH429 4.4 39.9 1.0
CG A:LEU198 4.5 17.3 1.0
CG1 A:VAL121 4.5 15.6 1.0
OG1 A:THR200 4.6 20.6 1.0
C34 A:WWX302 4.7 25.9 1.0
CD1 A:LEU198 4.7 19.8 1.0
N4 A:WWX302 4.8 20.6 1.0
F11 A:WWX302 4.8 23.5 1.0
CB A:LEU198 4.8 16.6 1.0
NE2 A:GLN92 5.0 25.9 1.0

Reference:

A.Smirnov, E.Manakova, S.Grazulis. Crystal Structure of Chimeric Carbonic Anhydrase XII with 2,3,6-Trifluoro-5-{[(1R,2S)-2-Hydroxy-1, 2-Diphenylethyl]Amino}-4-[(2-Hydroxyethyl) Sulfonyl]Benzenesulfonamide To Be Published.
Page generated: Tue Jul 15 17:48:18 2025

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