Atomistry » Fluorine » PDB 6yhc-6z4b » 6yvj
Atomistry »
  Fluorine »
    PDB 6yhc-6z4b »
      6yvj »

Fluorine in PDB 6yvj: Eed in Complex with A Triazolopyrimidine

Protein crystallography data

The structure of Eed in Complex with A Triazolopyrimidine, PDB code: 6yvj was solved by J.A.Read, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.94 / 1.84
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 87.02, 89.87, 99.14, 90, 90, 90
R / Rfree (%) 18.2 / 19.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Eed in Complex with A Triazolopyrimidine (pdb code 6yvj). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Eed in Complex with A Triazolopyrimidine, PDB code: 6yvj:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6yvj

Go back to Fluorine Binding Sites List in 6yvj
Fluorine binding site 1 out of 2 in the Eed in Complex with A Triazolopyrimidine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Eed in Complex with A Triazolopyrimidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F502

b:36.4
occ:0.50
F27 B:EJR502 0.0 36.4 0.5
F27 B:EJR502 0.1 25.6 0.5
C23 B:EJR502 1.3 22.7 0.5
C23 B:EJR502 1.4 35.0 0.5
C18 B:EJR502 2.3 21.9 0.5
C22 B:EJR502 2.3 34.0 0.5
C18 B:EJR502 2.3 34.4 0.5
C22 B:EJR502 2.3 20.8 0.5
C17 B:EJR502 2.8 23.9 0.5
C17 B:EJR502 2.9 35.2 0.5
N10 B:EJR502 3.0 24.7 0.5
N10 B:EJR502 3.1 35.4 0.5
O B:LEU240 3.1 26.8 1.0
CB B:ASN194 3.2 24.8 1.0
CG B:ASN194 3.3 34.4 1.0
OD1 B:ASN194 3.4 25.9 1.0
C19 B:EJR502 3.6 20.8 0.5
C21 B:EJR502 3.6 20.6 0.5
C19 B:EJR502 3.6 33.7 0.5
C21 B:EJR502 3.6 33.6 0.5
NH2 B:ARG367 3.7 39.5 1.0
CD1 B:TYR365 3.7 33.5 1.0
O B:ASN194 3.7 24.7 1.0
CE1 B:TYR365 3.9 34.3 1.0
C5 B:EJR502 4.0 26.9 0.5
C B:LEU240 4.0 26.7 1.0
ND2 B:ASN194 4.0 27.1 1.0
CD2 B:LEU240 4.0 37.8 1.0
CA B:LEU240 4.0 24.2 1.0
CA B:ASN194 4.0 23.7 1.0
C20 B:EJR502 4.0 20.0 0.5
C20 B:EJR502 4.1 33.6 0.5
CB B:LEU240 4.1 25.7 1.0
C5 B:EJR502 4.2 36.9 0.5
C B:ASN194 4.2 25.9 1.0
CZ B:ARG367 4.3 60.5 1.0
NH1 B:ARG367 4.5 48.2 1.0
N6 B:EJR502 4.7 26.6 0.5
CG B:LEU240 4.7 32.8 1.0
N4 B:EJR502 4.8 28.2 0.5
N4 B:EJR502 4.9 38.1 0.5
C24 B:EJR502 4.9 21.3 0.5
N6 B:EJR502 4.9 36.7 0.5
CG B:TYR365 5.0 32.7 1.0
C24 B:EJR502 5.0 33.6 0.5
C9 B:EJR502 5.0 27.9 0.5

Fluorine binding site 2 out of 2 in 6yvj

Go back to Fluorine Binding Sites List in 6yvj
Fluorine binding site 2 out of 2 in the Eed in Complex with A Triazolopyrimidine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Eed in Complex with A Triazolopyrimidine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F502

b:25.6
occ:0.50
F27 B:EJR502 0.0 25.6 0.5
F27 B:EJR502 0.1 36.4 0.5
C23 B:EJR502 1.4 22.7 0.5
C23 B:EJR502 1.4 35.0 0.5
C22 B:EJR502 2.3 34.0 0.5
C22 B:EJR502 2.3 20.8 0.5
C18 B:EJR502 2.3 21.9 0.5
C18 B:EJR502 2.4 34.4 0.5
C17 B:EJR502 2.9 23.9 0.5
C17 B:EJR502 2.9 35.2 0.5
N10 B:EJR502 3.0 24.7 0.5
O B:LEU240 3.1 26.8 1.0
N10 B:EJR502 3.1 35.4 0.5
CB B:ASN194 3.2 24.8 1.0
CG B:ASN194 3.3 34.4 1.0
OD1 B:ASN194 3.4 25.9 1.0
C21 B:EJR502 3.6 20.6 0.5
C19 B:EJR502 3.6 20.8 0.5
C21 B:EJR502 3.6 33.6 0.5
NH2 B:ARG367 3.6 39.5 1.0
C19 B:EJR502 3.7 33.7 0.5
O B:ASN194 3.7 24.7 1.0
CD1 B:TYR365 3.8 33.5 1.0
CE1 B:TYR365 3.9 34.3 1.0
C B:LEU240 3.9 26.7 1.0
CA B:LEU240 4.0 24.2 1.0
ND2 B:ASN194 4.0 27.1 1.0
CD2 B:LEU240 4.0 37.8 1.0
CA B:ASN194 4.0 23.7 1.0
CB B:LEU240 4.1 25.7 1.0
C5 B:EJR502 4.1 26.9 0.5
C20 B:EJR502 4.1 20.0 0.5
C20 B:EJR502 4.1 33.6 0.5
C B:ASN194 4.2 25.9 1.0
C5 B:EJR502 4.3 36.9 0.5
CZ B:ARG367 4.3 60.5 1.0
NH1 B:ARG367 4.5 48.2 1.0
CG B:LEU240 4.7 32.8 1.0
N6 B:EJR502 4.7 26.6 0.5
N4 B:EJR502 4.8 28.2 0.5
C24 B:EJR502 5.0 21.3 0.5
N4 B:EJR502 5.0 38.1 0.5

Reference:

J.A.Read, J.A.Read. N/A N/A.
Page generated: Fri Aug 2 04:48:39 2024

Last articles

Cl in 3MTH
Cl in 3MTB
Cl in 3MT8
Cl in 3MTC
Cl in 3MT0
Cl in 3MST
Cl in 3MSW
Cl in 3MS9
Cl in 3MSU
Cl in 3MSJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy