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Fluorine in PDB 6ywb: Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)]

Protein crystallography data

The structure of Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)], PDB code: 6ywb was solved by E.Boura, M.Smola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.07 / 2.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 110.906, 110.906, 35.67, 90, 90, 90
R / Rfree (%) 21 / 25.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)] (pdb code 6ywb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)], PDB code: 6ywb:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6ywb

Go back to Fluorine Binding Sites List in 6ywb
Fluorine binding site 1 out of 2 in the Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)]


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:26.6
occ:0.49
F1 A:PWB401 0.0 26.6 0.5
C16 A:PWB401 1.3 29.1 0.5
C17 A:PWB401 2.3 29.1 0.5
C15 A:PWB401 2.3 28.5 0.5
O7 A:PWB401 2.6 29.7 0.5
C18 A:PWB401 2.8 28.7 0.5
O5 A:PWB401 3.0 30.6 0.5
N6 A:PWB401 3.4 29.3 0.5
P A:PWB401 3.8 29.0 0.5
O A:PWB401 3.8 27.1 0.5
N5 A:PWB401 3.9 32.4 0.5
C11 A:PWB401 3.9 30.1 0.5
C19 A:PWB401 4.3 27.3 0.5
C14 A:PWB401 4.5 28.7 0.5
S1 A:PWB401 4.8 25.3 0.5
O2 A:PWB401 4.9 30.1 0.5
NH1 A:ARG238 4.9 23.6 1.0
O8 A:PWB401 5.0 30.1 0.5

Fluorine binding site 2 out of 2 in 6ywb

Go back to Fluorine Binding Sites List in 6ywb
Fluorine binding site 2 out of 2 in the Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)]


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:26.5
occ:0.49
F2 A:PWB401 0.0 26.5 0.5
C6 A:PWB401 1.3 28.2 0.5
C7 A:PWB401 2.3 29.2 0.5
C5 A:PWB401 2.3 28.8 0.5
O10 A:PWB401 2.6 30.7 0.5
C8 A:PWB401 2.8 28.7 0.5
O1 A:PWB401 3.0 30.5 0.5
CD A:PRO264 3.2 30.1 1.0
CB A:THR263 3.3 33.7 1.0
O A:HOH507 3.4 23.8 1.0
N2 A:PWB401 3.4 29.3 0.5
CD1 A:TYR163 3.5 30.1 1.0
CG A:PRO264 3.6 28.2 1.0
OG1 A:THR263 3.8 32.6 1.0
P1 A:PWB401 3.8 28.2 0.5
O22 A:PWB401 3.8 27.1 0.5
CE1 A:TYR163 3.8 34.1 1.0
N1 A:PWB401 3.9 32.4 0.5
C1 A:PWB401 3.9 27.7 0.5
N A:PRO264 4.0 32.6 1.0
CG2 A:THR263 4.1 14.8 1.0
CA A:THR263 4.2 29.3 1.0
C9 A:PWB401 4.3 27.3 0.5
C A:THR263 4.3 27.8 1.0
O4 A:PWB401 4.5 25.7 0.5
N A:THR263 4.5 33.2 1.0
C4 A:PWB401 4.5 28.8 0.5
CG A:TYR163 4.7 27.9 1.0
CA A:PRO264 4.9 32.2 1.0
CB A:PRO264 4.9 23.9 1.0
O8 A:PWB401 4.9 30.1 0.5
O2 A:PWB401 5.0 30.1 0.5

Reference:

E.Boura, M.Smola. Human Wtsting in Complex with 3',3'-C-[2'Fdamp-2'Fdam(Ps)] To Be Published.
Page generated: Fri Aug 2 04:51:38 2024

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