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Fluorine in PDB 7aze: Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound

Protein crystallography data

The structure of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound, PDB code: 7aze was solved by C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, V.Olieric, P.Wolff, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Guichard, D.Y.Burnouf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.87 / 1.82
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 63.5, 64.81, 71.1, 106.71, 100.07, 116.95
R / Rfree (%) 19.3 / 23

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound (pdb code 7aze). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound, PDB code: 7aze:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7aze

Go back to Fluorine Binding Sites List in 7aze
Fluorine binding site 1 out of 2 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F403

b:53.1
occ:1.00
F1 A:SJ8403 0.0 53.1 1.0
C6 A:SJ8403 1.3 52.3 1.0
C7 A:SJ8403 2.3 50.7 1.0
C5 A:SJ8403 2.4 50.8 1.0
C8 A:SJ8403 3.5 48.9 1.0
C4 A:SJ8403 3.6 49.2 1.0
C3 A:SJ8403 4.1 46.8 1.0
O A:HOH750 4.3 48.4 1.0
CD2 A:PHE278 5.0 26.4 1.0
CE2 A:PHE278 5.0 30.3 1.0

Fluorine binding site 2 out of 2 in 7aze

Go back to Fluorine Binding Sites List in 7aze
Fluorine binding site 2 out of 2 in the Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:46.9
occ:1.00
F1 B:SJ8602 0.0 46.9 1.0
C6 B:SJ8602 1.3 42.4 1.0
C5 B:SJ8602 2.3 40.2 1.0
C7 B:SJ8602 2.4 39.3 1.0
C4 B:SJ8602 3.6 36.6 1.0
C8 B:SJ8602 3.7 34.3 1.0
C3 B:SJ8602 4.1 33.0 1.0

Reference:

C.Monsarrat, G.Compain, C.Andre, I.Martiel, S.Engilberge, P.Wolff, V.Olieric, K.Brillet, M.Landolfo, C.Silva Da Veiga, J.Wagner, G.Guichard, D.Y.Burnouf. Dna Polymerase Sliding Clamp From Escherichia Coli with Peptide 18 Bound To Be Published.
Page generated: Fri Aug 2 05:52:19 2024

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