Fluorine in PDB 7bsq: Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State

The structure of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Aluminium	(Al)	1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State (pdb code 7bsq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State, PDB code: 7bsq:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:43.6 occ:1.00 F1 A:ALF1101 0.0 43.6 1.0 AL A:ALF1101 1.8 43.6 1.0 NZ A:LYS795 2.2 35.3 1.0 OD2 A:ASP409 2.5 35.3 1.0 F4 A:ALF1101 2.5 43.6 1.0 F3 A:ALF1101 2.6 43.6 1.0 CG A:ASP409 3.1 35.3 1.0 OD1 A:ASP409 3.2 35.3 1.0 CE A:LYS795 3.3 35.3 1.0 F2 A:ALF1101 3.6 43.6 1.0 OD1 A:ASP820 3.6 38.1 1.0 O1B A:ADP1102 3.6 63.5 1.0 O3A A:ADP1102 3.6 63.5 1.0 ND2 A:ASN819 3.8 43.6 1.0 CB A:ASN819 3.8 43.6 1.0 CG A:ASN819 4.1 43.6 1.0 N A:GLY675 4.1 45.7 1.0 OD2 A:ASP820 4.2 38.1 1.0 CG A:ASP820 4.3 38.1 1.0 PB A:ADP1102 4.3 63.5 1.0 CB A:ASP409 4.4 35.3 1.0 CD A:LYS795 4.4 35.3 1.0 O1A A:ADP1102 4.5 63.5 1.0 PA A:ADP1102 4.6 63.5 1.0 C A:THR674 4.6 37.3 1.0 CA A:GLY675 4.7 45.7 1.0 CA A:THR674 4.8 37.3 1.0 O A:LEU673 4.8 28.0 1.0

Fluorine binding site 2 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:43.6 occ:1.00 F2 A:ALF1101 0.0 43.6 1.0 AL A:ALF1101 1.8 43.6 1.0 O1B A:ADP1102 2.0 63.5 1.0 O A:THR411 2.1 43.7 1.0 F4 A:ALF1101 2.5 43.6 1.0 OD1 A:ASP409 2.5 35.3 1.0 F3 A:ALF1101 2.6 43.6 1.0 N A:THR411 2.9 43.7 1.0 C A:THR411 2.9 43.7 1.0 CB A:THR411 3.0 43.7 1.0 CA A:THR411 3.0 43.7 1.0 PB A:ADP1102 3.2 63.5 1.0 CG A:ASP409 3.3 35.3 1.0 OD2 A:ASP409 3.4 35.3 1.0 O3B A:ADP1102 3.5 63.5 1.0 F1 A:ALF1101 3.6 43.6 1.0 CG2 A:THR411 3.8 43.7 1.0 O3A A:ADP1102 3.9 63.5 1.0 C A:LYS410 4.0 39.9 1.0 OG1 A:THR411 4.1 43.7 1.0 N A:GLY412 4.2 40.5 1.0 N A:LYS410 4.3 39.9 1.0 O2B A:ADP1102 4.4 63.5 1.0 CB A:ASP409 4.6 35.3 1.0 CA A:LYS410 4.7 39.9 1.0 C A:ASP409 4.7 35.3 1.0 O A:LYS410 4.9 39.9 1.0 CA A:GLY412 4.9 40.5 1.0

Fluorine binding site 3 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:43.6 occ:1.00 F3 A:ALF1101 0.0 43.6 1.0 AL A:ALF1101 1.8 43.6 1.0 OD2 A:ASP409 2.0 35.3 1.0 F2 A:ALF1101 2.6 43.6 1.0 F1 A:ALF1101 2.6 43.6 1.0 CG A:ASP409 2.9 35.3 1.0 OD1 A:ASP409 3.1 35.3 1.0 OD2 A:ASP820 3.3 38.1 1.0 O A:THR411 3.4 43.7 1.0 F4 A:ALF1101 3.6 43.6 1.0 O1B A:ADP1102 3.7 63.5 1.0 CG A:ASP820 4.0 38.1 1.0 OD1 A:ASP820 4.1 38.1 1.0 OD1 A:ASP816 4.2 35.5 1.0 O3A A:ADP1102 4.2 63.5 1.0 CB A:ASP409 4.2 35.3 1.0 PB A:ADP1102 4.4 63.5 1.0 NZ A:LYS795 4.5 35.3 1.0 CB A:ASN819 4.6 43.6 1.0 O2A A:ADP1102 4.6 63.5 1.0 O3B A:ADP1102 4.6 63.5 1.0 C A:THR411 4.6 43.7 1.0 CG A:ASN819 4.7 43.6 1.0 CA A:GLY817 4.7 39.1 1.0 N A:GLY817 4.7 39.1 1.0 OE2 A:GLU837 4.7 55.9 1.0 ND2 A:ASN819 4.8 43.6 1.0 PA A:ADP1102 4.9 63.5 1.0

Fluorine binding site 4 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF-Adp State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:43.6 occ:1.00 F4 A:ALF1101 0.0 43.6 1.0 AL A:ALF1101 1.8 43.6 1.0 O1B A:ADP1102 1.9 63.5 1.0 F2 A:ALF1101 2.5 43.6 1.0 F1 A:ALF1101 2.5 43.6 1.0 OD1 A:ASP409 2.6 35.3 1.0 N A:GLY675 3.0 45.7 1.0 PB A:ADP1102 3.1 63.5 1.0 OG1 A:THR674 3.2 37.3 1.0 O3A A:ADP1102 3.3 63.5 1.0 CG A:ASP409 3.5 35.3 1.0 F3 A:ALF1101 3.6 43.6 1.0 OD2 A:ASP409 3.7 35.3 1.0 CA A:THR674 3.7 37.3 1.0 C A:THR674 3.8 37.3 1.0 O2B A:ADP1102 3.8 63.5 1.0 CB A:THR674 3.9 37.3 1.0 CA A:GLY675 3.9 45.7 1.0 N A:THR411 4.0 43.7 1.0 N A:LYS410 4.1 39.9 1.0 NZ A:LYS795 4.2 35.3 1.0 N A:ASP676 4.3 52.7 1.0 O3B A:ADP1102 4.3 63.5 1.0 C A:GLY675 4.5 45.7 1.0 O A:THR411 4.6 43.7 1.0 CB A:THR411 4.6 43.7 1.0 CB A:LYS410 4.6 39.9 1.0 CA A:LYS410 4.8 39.9 1.0 CA A:THR411 4.8 43.7 1.0 CB A:ASP409 4.8 35.3 1.0 CE A:LYS795 4.8 35.3 1.0 PA A:ADP1102 4.9 63.5 1.0 C A:LYS410 4.9 39.9 1.0 C A:ASP409 4.9 35.3 1.0 O A:LEU673 4.9 28.0 1.0 O A:THR674 4.9 37.3 1.0

H.Nakanishi, T.Nishizawa, K.Segawa, O.Nureki, Y.Fujiyoshi, S.Nagata, K.Abe. Transport Cycle of Plasma Membrane Flippase ATP11C By Cryo-Em. Cell Rep V. 32 08208 2020.
ISSN: ESSN 2211-1247
PubMed: 32997992
DOI: 10.1016/J.CELREP.2020.108208