Atomistry » Fluorine » PDB 7dcz-7e5i » 7dkt
Atomistry »
  Fluorine »
    PDB 7dcz-7e5i »
      7dkt »

Fluorine in PDB 7dkt: Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride

Enzymatic activity of Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride

All present enzymatic activity of Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride:
3.2.1.21;

Protein crystallography data

The structure of Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride, PDB code: 7dkt was solved by S.Pengthaisong, J.R.Ketudat Cairns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 88.52 / 1.65
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 177.049, 54.689, 83.24, 90, 90, 90
R / Rfree (%) 16 / 18.7

Other elements in 7dkt:

The structure of Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride (pdb code 7dkt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride, PDB code: 7dkt:

Fluorine binding site 1 out of 1 in 7dkt

Go back to Fluorine Binding Sites List in 7dkt
Fluorine binding site 1 out of 1 in the Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of TXGH116 E441A Nucleophile Mutant From Thermoanaerobacterium Xylanolyticum with Alpha-Glucosyl Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1001

b:11.8
occ:1.00
 F1 A:GLF1001 0.0 11.8 1.0
C1 A:GLF1001 1.4 11.8 1.0
O5 A:GLF1001 2.3 11.1 1.0
C2 A:GLF1001 2.4 11.4 1.0
OH A:TYR790 2.8 11.3 1.0
O2 A:GLF1001 2.8 11.5 1.0
C3 A:GLF1001 2.9 11.5 1.0
C5 A:GLF1001 2.9 11.4 1.0
O A:HOH1120 3.0 25.2 1.0
CD2 A:TYR445 3.2 12.0 1.0
C4 A:GLF1001 3.5 11.4 1.0
CZ A:TYR790 3.8 10.2 1.0
CG A:TYR445 3.8 11.6 1.0
CB A:TYR445 3.8 11.4 1.0
CE1 A:TYR790 3.9 9.9 1.0
CE2 A:TYR445 3.9 12.1 1.0
O A:HOH1158 4.1 20.6 1.0
O3 A:GLF1001 4.2 12.0 1.0
C6 A:GLF1001 4.3 11.4 1.0
CB A:ALA441 4.4 10.3 1.0
O4 A:GLF1001 4.5 11.6 1.0
O6 A:GLF1001 4.5 12.1 1.0
CG2 A:VAL453 4.8 9.3 1.0
CD1 A:TYR445 5.0 12.4 1.0
C1 A:GOL1002 5.0 28.1 1.0

Reference:

S.Pengthaisong, Y.Hua, J.R.Ketudat Cairns. Structural Basis For Transglycosylation in Glycoside Hydrolase Family GH116 Glycosynthases. Arch.Biochem.Biophys. V. 706 08924 2021.
ISSN: ESSN 1096-0384
PubMed: 34019851
DOI: 10.1016/J.ABB.2021.108924
Page generated: Tue Jul 15 19:08:53 2025

Last articles

Mg in 4AV6
Mg in 4AVA
Mg in 4AV3
Mg in 4AUX
Mg in 4ATB
Mg in 4AUI
Mg in 4AT9
Mg in 4AT8
Mg in 4AS5
Mg in 4ASU
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy