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Fluorine in PDB 7fz4: Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid

Protein crystallography data

The structure of Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid, PDB code: 7fz4 was solved by A.Ehler, J.Benz, U.Obst, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.27 / 1.01
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.519, 53.691, 74.521, 90, 90, 90
R / Rfree (%) 14.4 / 16.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid (pdb code 7fz4). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 5 binding sites of Fluorine where determined in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid, PDB code: 7fz4:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5;

Fluorine binding site 1 out of 5 in 7fz4

Go back to Fluorine Binding Sites List in 7fz4
Fluorine binding site 1 out of 5 in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:11.5
occ:1.00
F14 A:WE2203 0.0 11.5 1.0
C07 A:WE2203 1.3 8.0 1.0
F15 A:WE2203 2.1 9.4 1.0
F16 A:WE2203 2.2 10.8 1.0
C03 A:WE2203 2.4 7.6 1.0
HD2 A:PHE57 2.6 13.1 1.0
N06 A:WE2203 2.6 7.4 1.0
HB1 A:ALA33 3.1 8.7 1.0
HB3 A:ALA36 3.2 8.7 1.0
CD2 A:PHE57 3.4 13.5 1.0
HA A:ALA33 3.5 7.9 1.0
HB2 A:ALA36 3.5 8.6 1.0
HB3 A:PHE57 3.6 10.5 1.0
C01 A:WE2203 3.6 7.4 1.0
CB A:ALA36 3.7 9.0 1.0
HB1 A:ALA36 3.8 8.9 1.0
CB A:ALA33 3.9 8.8 1.0
O A:ALA33 3.9 8.3 1.0
C04 A:WE2203 3.9 6.8 1.0
HG A:SER55 4.0 9.6 1.0
HG3 A:PRO38 4.0 12.8 1.0
HE2 A:PHE57 4.1 15.6 1.0
CA A:ALA33 4.1 7.6 1.0
O A:HOH349 4.1 11.1 1.0
HB2 A:ALA33 4.1 8.7 1.0
OG A:SER55 4.2 9.6 1.0
CE2 A:PHE57 4.2 16.4 1.0
C09 A:WE2203 4.3 9.6 1.0
CG A:PHE57 4.3 11.5 1.0
CB A:PHE57 4.3 10.5 1.0
HB1 A:ALA75 4.4 10.7 1.0
O A:HOH440 4.4 17.1 1.0
C A:ALA33 4.4 7.8 1.0
F19 A:WE2203 4.4 12.0 1.0
O13 A:WE2203 4.5 9.7 1.0
HB2 A:PHE57 4.6 10.5 1.0
HB3 A:ALA33 4.6 8.5 1.0
HE2 A:PHE16 4.7 8.0 1.0
HH12 A:ARG126 4.7 7.0 0.5
C10 A:WE2203 4.7 8.1 1.0
C05 A:WE2203 4.7 7.5 1.0
HB3 A:ALA75 4.8 10.8 1.0
HZ A:PHE16 4.8 8.8 1.0
C02 A:WE2203 4.9 7.5 1.0
HB3 A:SER55 4.9 9.3 1.0
CB A:ALA75 4.9 11.0 1.0
O A:HOH342 4.9 9.0 1.0
O20 A:WE2203 4.9 12.8 1.0
HB2 A:ALA75 4.9 10.8 1.0
HB2 A:LYS58 5.0 15.1 1.0
HD3 A:PRO38 5.0 9.7 1.0

Fluorine binding site 2 out of 5 in 7fz4

Go back to Fluorine Binding Sites List in 7fz4
Fluorine binding site 2 out of 5 in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:9.4
occ:1.00
F15 A:WE2203 0.0 9.4 1.0
C07 A:WE2203 1.4 8.0 1.0
F14 A:WE2203 2.1 11.5 1.0
F16 A:WE2203 2.2 10.8 1.0
C03 A:WE2203 2.4 7.6 1.0
HH12 A:ARG126 2.6 7.0 0.5
HB3 A:ALA36 2.8 8.7 1.0
HH22 A:ARG126 2.9 8.5 0.5
HH11 A:ARG126 2.9 6.9 0.5
HG3 A:PRO38 3.0 12.8 1.0
NH1 A:ARG126 3.0 6.6 0.5
HH21 A:ARG126 3.0 8.4 0.5
O13 A:WE2203 3.1 9.7 1.0
N06 A:WE2203 3.1 7.4 1.0
NH2 A:ARG126 3.2 8.9 0.5
C01 A:WE2203 3.2 7.4 1.0
O A:HOH342 3.2 9.0 1.0
C09 A:WE2203 3.4 9.6 1.0
O A:ALA33 3.5 8.3 1.0
HE2 A:PHE16 3.5 8.0 1.0
CB A:ALA36 3.7 9.0 1.0
HD3 A:PRO38 3.7 9.7 1.0
CG A:PRO38 3.8 14.0 1.0
HB1 A:ALA33 3.8 8.7 1.0
HZ A:PHE16 3.9 8.8 1.0
HB1 A:ALA36 3.9 8.9 1.0
HG2 A:PRO38 4.0 12.6 1.0
HB2 A:ALA36 4.0 8.6 1.0
CE2 A:PHE16 4.0 8.5 1.0
CZ A:ARG126 4.2 8.5 0.5
CZ A:PHE16 4.2 9.4 1.0
CD A:PRO38 4.2 9.4 1.0
CZ A:ARG126 4.3 7.6 0.5
C04 A:WE2203 4.3 6.8 1.0
C A:ALA33 4.4 7.8 1.0
O20 A:WE2203 4.4 12.8 1.0
C05 A:WE2203 4.4 7.5 1.0
HA A:ALA33 4.4 7.9 1.0
H35 A:WE2203 4.6 10.5 1.0
HH22 A:ARG126 4.6 8.1 0.5
HD2 A:PRO38 4.6 9.5 1.0
CB A:ALA33 4.7 8.8 1.0
HD2 A:PHE57 4.7 13.1 1.0
H A:ALA36 4.8 8.0 1.0
CA A:ALA33 4.8 7.6 1.0
HB3 A:PRO38 4.8 9.7 1.0
HH12 A:ARG126 4.8 8.2 0.5
O A:ALA36 4.8 9.0 1.0
CA A:ALA36 4.8 7.8 1.0
NH2 A:ARG126 4.9 8.1 0.5
C02 A:WE2203 4.9 7.5 1.0
CB A:PRO38 4.9 9.8 1.0
HE A:ARG126 4.9 6.8 0.5
NH1 A:ARG126 5.0 8.3 0.5
C A:ALA36 5.0 8.0 1.0
HG A:SER53 5.0 11.1 1.0

Fluorine binding site 3 out of 5 in 7fz4

Go back to Fluorine Binding Sites List in 7fz4
Fluorine binding site 3 out of 5 in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:10.8
occ:1.00
F16 A:WE2203 0.0 10.8 1.0
C07 A:WE2203 1.4 8.0 1.0
F14 A:WE2203 2.2 11.5 1.0
F15 A:WE2203 2.2 9.4 1.0
C03 A:WE2203 2.4 7.6 1.0
HG3 A:PRO38 2.6 12.8 1.0
C09 A:WE2203 2.7 9.6 1.0
C01 A:WE2203 2.9 7.4 1.0
O13 A:WE2203 3.0 9.7 1.0
HG A:SER53 3.1 11.1 1.0
O A:HOH349 3.1 11.1 1.0
O20 A:WE2203 3.1 12.8 1.0
N06 A:WE2203 3.5 7.4 1.0
OG A:SER53 3.5 11.5 1.0
CG A:PRO38 3.5 14.0 1.0
HB3 A:PRO38 3.6 9.7 1.0
O A:HOH440 3.7 17.1 1.0
HG2 A:PRO38 3.8 12.6 1.0
HG A:SER55 4.0 9.6 1.0
HH11 A:ARG126 4.0 6.9 0.5
HB3 A:ALA36 4.0 8.7 1.0
HH21 A:ARG126 4.0 8.4 0.5
CB A:PRO38 4.1 9.8 1.0
C05 A:WE2203 4.2 7.5 1.0
HH12 A:ARG126 4.2 7.0 0.5
O A:HOH311 4.3 15.4 1.0
HB3 A:SER55 4.3 9.3 1.0
HD3 A:PRO38 4.3 9.7 1.0
HB1 A:ALA36 4.3 8.9 1.0
OG A:SER55 4.3 9.6 1.0
HD2 A:PHE57 4.3 13.1 1.0
NH1 A:ARG126 4.4 6.6 0.5
O A:HOH362 4.4 11.7 1.0
HH22 A:ARG126 4.5 8.5 0.5
HB2 A:PRO38 4.5 10.2 1.0
NH2 A:ARG126 4.5 8.9 0.5
CD A:PRO38 4.5 9.4 1.0
CB A:ALA36 4.6 9.0 1.0
C04 A:WE2203 4.6 6.8 1.0
CB A:SER53 4.7 10.0 1.0
HB3 A:SER53 4.8 10.7 1.0
HB2 A:ALA36 4.8 8.6 1.0
CB A:SER55 4.8 9.6 1.0
C02 A:WE2203 4.9 7.5 1.0
HB2 A:ALA75 5.0 10.8 1.0
H26 A:WE2203 5.0 10.4 1.0
HB1 A:ALA33 5.0 8.7 1.0

Fluorine binding site 4 out of 5 in 7fz4

Go back to Fluorine Binding Sites List in 7fz4
Fluorine binding site 4 out of 5 in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:14.7
occ:1.00
F18 A:WE2203 0.0 14.7 1.0
C10 A:WE2203 1.3 8.1 1.0
H25 A:WE2203 2.0 8.2 1.0
F19 A:WE2203 2.0 12.0 1.0
C04 A:WE2203 2.3 6.8 1.0
HB3 A:ASP76 2.5 10.3 1.0
C08 A:WE2203 2.6 7.6 1.0
O12 A:WE2203 2.7 8.3 1.0
C02 A:WE2203 2.8 7.5 1.0
H32 A:WE2203 2.9 9.5 1.0
O17 A:WE2203 3.0 10.5 1.0
HB3 A:ALA75 3.2 10.8 1.0
H A:ASP76 3.3 9.3 1.0
CB A:ASP76 3.3 9.9 1.0
HG21 A:VAL25 3.3 8.1 1.0
OD1 A:ASP76 3.3 8.8 1.0
C22 A:WE2203 3.3 9.1 1.0
N06 A:WE2203 3.5 7.4 1.0
CG A:ASP76 3.5 9.1 1.0
N A:ASP76 3.6 9.5 1.0
CA A:ASP76 3.9 11.3 1.0
HG11 A:VAL25 4.0 8.4 1.0
H31 A:WE2203 4.0 9.4 1.0
HB2 A:ASP76 4.0 10.6 1.0
HG2 A:MET20 4.0 7.0 1.0
H30 A:WE2203 4.1 9.6 1.0
CB A:ALA75 4.1 11.0 1.0
CG2 A:VAL25 4.2 7.7 1.0
HA A:ASP76 4.2 10.9 1.0
C05 A:WE2203 4.2 7.5 1.0
HG22 A:THR29 4.2 10.3 1.0
C A:ALA75 4.3 9.9 1.0
HH21 A:ARG78 4.3 8.2 1.0
HG22 A:VAL25 4.3 8.1 1.0
SD A:MET20 4.3 7.6 1.0
OD2 A:ASP76 4.3 10.2 1.0
HB1 A:ALA75 4.4 10.7 1.0
HZ A:PHE16 4.5 8.8 1.0
HB1 A:ALA33 4.5 8.7 1.0
HE2 A:PHE57 4.5 15.6 1.0
C03 A:WE2203 4.6 7.6 1.0
H A:ALA75 4.7 9.1 1.0
CA A:ALA75 4.7 10.0 1.0
HG21 A:THR29 4.7 10.2 1.0
HG23 A:VAL25 4.7 7.8 1.0
HG13 A:VAL25 4.7 8.8 1.0
HB2 A:ALA75 4.7 10.8 1.0
CG1 A:VAL25 4.7 8.9 1.0
CG A:MET20 4.7 7.2 1.0
HB2 A:ALA33 4.8 8.7 1.0
HB3 A:ALA33 4.8 8.5 1.0
CG2 A:THR29 4.8 10.6 1.0
N A:ALA75 4.9 8.9 1.0
HG1 A:THR74 4.9 9.0 1.0
CB A:ALA33 4.9 8.8 1.0
C01 A:WE2203 4.9 7.4 1.0
O A:ALA75 5.0 12.2 1.0

Fluorine binding site 5 out of 5 in 7fz4

Go back to Fluorine Binding Sites List in 7fz4
Fluorine binding site 5 out of 5 in the Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Human FABP4 in Complex with 6-(Difluoromethyl)-4- Isobutyl-5-Methoxycarbonyl-2-(Trifluoromethyl)Pyridine-3-Carboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:12.0
occ:1.00
F19 A:WE2203 0.0 12.0 1.0
C10 A:WE2203 1.3 8.1 1.0
H25 A:WE2203 2.0 8.2 1.0
F18 A:WE2203 2.0 14.7 1.0
C04 A:WE2203 2.3 6.8 1.0
N06 A:WE2203 2.7 7.4 1.0
HE2 A:PHE57 2.7 15.6 1.0
HB3 A:ALA75 2.9 10.8 1.0
HB1 A:ALA33 3.0 8.7 1.0
HB2 A:ALA33 3.0 8.7 1.0
HB3 A:ASP76 3.2 10.3 1.0
CB A:ALA33 3.3 8.8 1.0
HB1 A:ALA75 3.4 10.7 1.0
CE2 A:PHE57 3.4 16.4 1.0
HG22 A:THR29 3.4 10.3 1.0
HB3 A:ALA33 3.5 8.5 1.0
C02 A:WE2203 3.5 7.5 1.0
CB A:ALA75 3.6 11.0 1.0
HG23 A:THR29 3.7 10.0 1.0
N A:ASP76 3.8 9.5 1.0
HG21 A:THR29 3.8 10.2 1.0
CG2 A:THR29 3.9 10.6 1.0
H A:ASP76 3.9 9.3 1.0
C A:ALA75 3.9 9.9 1.0
C03 A:WE2203 4.0 7.6 1.0
HA A:ASP76 4.0 10.9 1.0
HZ A:PHE57 4.0 15.8 1.0
C08 A:WE2203 4.0 7.6 1.0
CB A:ASP76 4.1 9.9 1.0
CZ A:PHE57 4.1 17.9 1.0
O A:ALA75 4.2 12.2 1.0
CA A:ASP76 4.2 11.3 1.0
HD2 A:PHE57 4.2 13.1 1.0
CD2 A:PHE57 4.3 13.5 1.0
HG11 A:VAL25 4.3 8.4 1.0
HB2 A:ALA75 4.3 10.8 1.0
O12 A:WE2203 4.4 8.3 1.0
CA A:ALA75 4.4 10.0 1.0
F14 A:WE2203 4.4 11.5 1.0
SD A:MET20 4.5 7.6 1.0
HG21 A:VAL25 4.6 8.1 1.0
O17 A:WE2203 4.6 10.5 1.0
C05 A:WE2203 4.7 7.5 1.0
HZ A:PHE16 4.7 8.8 1.0
HB2 A:ASP76 4.7 10.6 1.0
CA A:ALA33 4.8 7.6 1.0
OD1 A:ASP76 4.8 8.8 1.0
C07 A:WE2203 4.8 8.0 1.0
C01 A:WE2203 4.8 7.4 1.0
CG A:ASP76 4.9 9.1 1.0
H32 A:WE2203 4.9 9.5 1.0
HA A:ALA33 4.9 7.9 1.0
O A:THR29 5.0 8.5 1.0

Reference:

U.Obst, C.Magnone, B.Kuhn, M.G.Rudolph. Crystal Structure of A Human FABP4 Complex To Be Published.
Page generated: Tue Jul 15 19:48:59 2025

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