Atomistry » Fluorine » PDB 7g2s-7g65 » 7g5b
Atomistry »
  Fluorine »
    PDB 7g2s-7g65 »
      7g5b »

Fluorine in PDB 7g5b: Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm

Enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm

All present enzymatic activity of Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm, PDB code: 7g5b was solved by M.Stihle, J.Benz, D.Hunziker, H.Stadler, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.97 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.992, 91.617, 120.549, 90, 90, 90
R / Rfree (%) 19.3 / 23.6

Other elements in 7g5b:

The structure of Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 2 atoms
Calcium (Ca) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm (pdb code 7g5b). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm, PDB code: 7g5b:

Fluorine binding site 1 out of 1 in 7g5b

Go back to Fluorine Binding Sites List in 7g5b
Fluorine binding site 1 out of 1 in the Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F901

b:32.1
occ:1.00
 F13 A:YB6901 0.0 32.1 1.0
C11 A:YB6901 1.3 28.9 1.0
C17 A:YB6901 2.4 27.1 1.0
C18 A:YB6901 2.4 28.5 1.0
C15 A:YB6901 3.6 29.7 1.0
C16 A:YB6901 3.7 29.6 1.0
CG2 A:ILE167 3.9 17.9 1.0
CD1 A:ILE167 3.9 22.2 1.0
CB A:LEU216 3.9 16.9 1.0
C09 A:YB6901 4.1 30.8 1.0
CE2 A:PHE273 4.1 27.0 1.0
C A:LEU216 4.4 16.6 1.0
CE A:MET512 4.4 18.2 1.0
CD2 A:PHE273 4.4 25.8 1.0
N A:ALA217 4.4 15.4 1.0
SD A:MET512 4.6 21.3 1.0
CB A:ILE167 4.6 18.8 1.0
O A:LEU216 4.6 16.5 1.0
CA A:ALA217 4.6 15.8 1.0
CG1 A:ILE167 4.7 20.0 1.0
CD1 A:LEU216 4.9 29.4 1.0
CA A:LEU216 4.9 16.3 1.0
CB A:ALA217 4.9 15.3 1.0
CG A:LEU216 5.0 22.3 1.0
O A:LEU213 5.0 16.8 1.0

Reference:

D.Hunziker, S.C.Joachim, C.Ullmer, M.G.Rudolph. Crystal Structure of A Rat Autotaxin Complex To Be Published.
Page generated: Tue Jul 15 19:59:45 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy