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Fluorine in PDB 7gcs: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733), PDB code: 7gcs was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.22 / 1.62
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.249, 53.354, 44.438, 90, 102.81, 90
R / Rfree (%) 18.7 / 22.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733) (pdb code 7gcs). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733), PDB code: 7gcs:

Fluorine binding site 1 out of 1 in 7gcs

Go back to Fluorine Binding Sites List in 7gcs
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Bar-Com-0F94FC3D-18 (Mpro-X10733) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:34.8
occ:1.00
F A:LS0404 0.0 34.8 1.0
C13 A:LS0404 1.4 34.2 1.0
C14 A:LS0404 2.3 33.6 1.0
C12 A:LS0404 2.3 33.9 1.0
CB A:ASP187 3.2 19.7 1.0
CA A:ASP187 3.3 20.6 1.0
CB A:MET165 3.5 23.8 1.0
SD A:MET165 3.6 38.9 1.0
C15 A:LS0404 3.6 33.2 1.0
C11 A:LS0404 3.6 33.4 1.0
ND1 A:HIS41 3.6 25.9 1.0
O A:HIS164 3.7 20.7 1.0
C A:ASP187 3.9 22.5 1.0
CG A:MET165 3.9 27.9 1.0
CE1 A:HIS41 4.1 26.4 1.0
CB A:HIS164 4.1 16.3 1.0
C10 A:LS0404 4.1 33.3 1.0
C A:HIS164 4.1 19.5 1.0
O A:HOH592 4.3 20.7 1.0
CE A:MET49 4.3 39.2 1.0
O A:ASP187 4.4 21.1 1.0
N A:ARG188 4.5 24.9 1.0
CG A:HIS41 4.5 23.5 1.0
CZ A:PHE181 4.5 19.6 1.0
CA A:MET165 4.5 21.7 1.0
N A:MET165 4.5 20.2 1.0
N A:ASP187 4.6 20.7 1.0
CG A:ASP187 4.6 20.6 1.0
CA A:HIS164 4.7 16.6 1.0
O A:VAL186 4.7 22.8 1.0
N2 A:LS0404 4.8 32.5 1.0
ND1 A:HIS164 4.9 18.4 1.0
CB A:HIS41 4.9 20.7 1.0
NE2 A:HIS41 5.0 26.2 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Tue Jul 15 20:10:19 2025

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