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Fluorine in PDB 7gj4: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160), PDB code: 7gj4 was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.30 / 2.13
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.321, 98.421, 102.714, 90, 90, 90
R / Rfree (%) 23.8 / 28.3

Other elements in 7gj4:

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160) (pdb code 7gj4). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160), PDB code: 7gj4:

Fluorine binding site 1 out of 1 in 7gj4

Go back to Fluorine Binding Sites List in 7gj4
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Edg-Med-5D232DE5-1 (Mpro-P0160) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:68.0
occ:0.85
F A:QKB404 0.0 68.0 0.8
C A:QKB404 1.4 67.4 0.8
C18 A:QKB404 2.3 66.9 0.8
C1 A:QKB404 2.3 66.9 0.8
C2 A:QKB404 3.6 66.4 0.8
C17 A:QKB404 3.6 66.2 0.8
CB A:ASN142 3.8 49.2 1.0
O A:HOH600 4.0 37.7 1.0
C3 A:QKB404 4.1 65.9 0.8
CG A:ASN142 4.2 56.0 1.0
OD1 A:ASN142 4.4 57.7 1.0
CA A:ASN142 4.4 46.1 1.0
N A:ASN142 4.5 45.2 1.0
C6 A:QKB404 4.8 65.9 0.8
O B:HOH569 4.9 43.2 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Tue Jul 15 20:13:04 2025

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