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Fluorine in PDB 7glc: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858), PDB code: 7glc was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.66 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.086, 100.905, 104.715, 90, 90, 90
R / Rfree (%) 22 / 27.1

Other elements in 7glc:

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858) (pdb code 7glc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858), PDB code: 7glc:

Fluorine binding site 1 out of 1 in 7glc

Go back to Fluorine Binding Sites List in 7glc
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Alp-Pos-6F6AE286-3 (Mpro-P1858) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F407

b:48.0
occ:1.00
F A:R87407 0.0 48.0 1.0
C16 A:R87407 1.4 47.3 1.0
C15 A:R87407 2.3 46.8 1.0
C17 A:R87407 2.3 46.8 1.0
O B:HOH595 3.1 34.5 1.0
C18 A:R87407 3.6 46.3 1.0
C14 A:R87407 3.6 46.3 1.0
C19 A:R87407 4.1 46.1 1.0
N A:ASN142 4.1 36.4 1.0
OE2 A:GLU166 4.4 43.5 1.0
N B:SER1 4.5 36.9 1.0
C A:LEU141 4.6 36.5 1.0
CA A:LEU141 4.6 36.7 1.0
OE1 A:GLU166 4.6 39.4 1.0
CD A:GLU166 4.7 39.9 1.0
O A:PHE140 4.8 36.1 1.0
CB A:ASN142 4.8 39.3 1.0
CA A:ASN142 4.8 36.6 1.0
C13 A:R87407 4.8 45.9 1.0
O A:HOH688 4.9 50.2 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Tue Jul 15 20:14:35 2025

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