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Fluorine in PDB 7gmw: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224), PDB code: 7gmw was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.92 / 1.83
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.851, 100.348, 104.01, 90, 90, 90
R / Rfree (%) 21.6 / 25.6

Other elements in 7gmw:

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224) (pdb code 7gmw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224), PDB code: 7gmw:

Fluorine binding site 1 out of 1 in 7gmw

Go back to Fluorine Binding Sites List in 7gmw
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Mat-Pos-E119AB4F-1 (Mpro-P2224) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F408

b:28.6
occ:0.64
F A:RQ6408 0.0 28.6 0.6
C11 A:RQ6408 1.4 28.3 0.6
C10 A:RQ6408 2.3 28.1 0.6
C12 A:RQ6408 2.3 28.0 0.6
O B:HOH563 2.9 33.1 1.0
O A:HOH644 2.9 35.5 1.0
C13 A:RQ6408 3.6 27.9 0.6
C9 A:RQ6408 3.6 27.9 0.6
C14 A:RQ6408 4.1 27.9 0.6
N A:ASN142 4.2 35.5 1.0
CA A:LEU141 4.6 35.3 1.0
N B:SER1 4.7 40.4 1.0
C A:LEU141 4.7 35.2 1.0
OE1 A:GLU166 4.7 37.5 1.0
OE2 A:GLU166 4.8 42.2 1.0
CB A:ASN142 4.8 39.2 1.0
C8 A:RQ6408 4.8 27.8 0.6
CA A:ASN142 4.9 36.3 1.0
O A:PHE140 5.0 34.3 1.0
CD A:GLU166 5.0 39.3 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Tue Jul 15 20:15:08 2025

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