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Fluorine in PDB 7hlb: Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015:
2.3.2.27;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015, PDB code: 7hlb was solved by Y.Kim, P.Marples, D.Fearon, F.Von Delft, S.Knapp, A.Kraemer, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.23 / 1.21
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 95.828, 95.828, 45.545, 90, 90, 90
R / Rfree (%) 17.9 / 19.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015 (pdb code 7hlb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015, PDB code: 7hlb:

Fluorine binding site 1 out of 1 in 7hlb

Go back to Fluorine Binding Sites List in 7hlb
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z45705015 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:31.0
occ:0.52
 F B:S9S401 0.0 31.0 0.5
C6 B:S9S401 1.4 29.5 0.5
C5 B:S9S401 2.3 28.7 0.5
C7 B:S9S401 2.3 28.1 0.5
ND2 B:ASN25 3.1 16.7 1.0
C B:ASN55 3.2 13.9 1.0
O B:SER54 3.2 17.5 1.0
O B:ASN55 3.3 15.2 1.0
N B:TYR56 3.5 13.3 1.0
C4 B:S9S401 3.6 28.6 0.5
C8 B:S9S401 3.6 28.1 0.5
CA B:ASN55 3.8 15.0 1.0
CG B:ASN25 3.9 14.8 1.0
CA B:TYR56 4.0 12.4 1.0
C B:SER54 4.0 14.6 1.0
OD1 B:ASN25 4.1 15.0 1.0
C3 B:S9S401 4.1 26.6 0.5
C B:TYR56 4.1 11.6 1.0
N B:ASN55 4.2 13.6 1.0
O B:TYR56 4.3 12.2 1.0
CE1 B:PHE177 4.4 19.0 1.0
CZ B:PHE177 4.6 18.1 1.0
N B:PRO57 4.7 12.1 1.0

Reference:

Y.Kim, P.Marples, D.Fearon, F.Von Delft, S.Knapp, A.Kraemer, Structural Genomics Consortium (Sgc). Pandda Analysis Group Deposition To Be Published.
Page generated: Tue Jul 15 20:23:33 2025

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