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Fluorine in PDB 7hns: Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991:
2.3.2.27;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991, PDB code: 7hns was solved by Y.Kim, P.Marples, D.Fearon, F.Von Delft, S.Knapp, A.Kraemer, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.48 / 1.29
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 95.427, 95.427, 45.844, 90, 90, 90
R / Rfree (%) 17.8 / 20.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991 (pdb code 7hns). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991, PDB code: 7hns:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7hns

Go back to Fluorine Binding Sites List in 7hns
Fluorine binding site 1 out of 2 in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:25.5
occ:0.52
F1 B:LQP202 0.0 25.5 0.5
C1 B:LQP202 1.3 23.8 0.5
F2 B:LQP202 2.1 23.8 0.5
O1 B:LQP202 2.2 23.9 0.5
C2 B:LQP202 2.6 22.9 0.5
O2 B:LQP202 3.0 20.8 0.5
C3 B:LQP202 3.0 23.1 0.5
NE1 B:TRP106 3.1 11.8 1.0
CD1 B:TRP106 3.4 11.0 1.0
CG B:PRO101 3.4 14.5 1.0
CB B:PRO101 3.6 14.0 1.0
CD2 B:PHE160 3.6 11.0 1.0
SG B:CYS163 3.9 13.2 1.0
N1 B:LQP202 4.2 23.9 0.5
CB B:PHE160 4.3 11.4 1.0
CA B:CYS163 4.3 12.9 1.0
O B:SER161 4.4 14.7 1.0
CG B:PHE160 4.4 10.2 1.0
CE2 B:TRP106 4.4 11.5 1.0
CE2 B:PHE160 4.5 11.3 1.0
CB B:CYS163 4.6 12.4 1.0
O B:HOH342 4.6 17.5 1.0
CG B:TRP106 4.7 9.9 1.0
N B:CYS163 4.9 14.2 1.0
CD B:PRO101 4.9 13.3 1.0
O B:HOH440 5.0 22.4 1.0
O B:GLU162 5.0 17.0 1.0
C10 B:LQP202 5.0 24.9 0.5

Fluorine binding site 2 out of 2 in 7hns

Go back to Fluorine Binding Sites List in 7hns
Fluorine binding site 2 out of 2 in the Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pandda Analysis Group Deposition -- Crystal Structure of TRIM21 in Complex with Z2072621991 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:23.8
occ:0.52
F2 B:LQP202 0.0 23.8 0.5
C1 B:LQP202 1.3 23.8 0.5
F1 B:LQP202 2.1 25.5 0.5
O1 B:LQP202 2.3 23.9 0.5
C2 B:LQP202 2.9 22.9 0.5
O B:HOH342 3.1 17.5 1.0
O B:SER161 3.1 14.7 1.0
O B:HOH440 3.7 22.4 1.0
CD2 B:PHE160 3.9 11.0 1.0
N B:SER161 4.1 12.1 1.0
C3 B:LQP202 4.1 23.1 0.5
CB B:PHE160 4.2 11.4 1.0
C B:SER161 4.3 12.9 1.0
CA B:PHE160 4.3 11.0 1.0
O2 B:LQP202 4.5 20.8 0.5
CG B:PHE160 4.5 10.2 1.0
C B:PHE160 4.6 11.2 1.0
SG B:CYS163 4.7 13.2 1.0
CG B:PRO101 4.9 14.5 1.0
CE2 B:PHE160 4.9 11.3 1.0
CA B:SER161 4.9 13.2 1.0
O B:GLU162 4.9 17.0 1.0
C B:GLU162 5.0 15.8 1.0

Reference:

Y.Kim, P.Marples, D.Fearon, F.Von Delft, S.Knapp, A.Kraemer, Structural Genomics Consortium (Sgc). Pandda Analysis Group Deposition To Be Published.
Page generated: Tue Jul 15 20:24:08 2025

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