Fluorine in PDB 7kle: Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp

Enzymatic activity of Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp

All present enzymatic activity of Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp:
2.7.7.7;

Protein crystallography data

The structure of Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp, PDB code: 7kle was solved by M.-C.Koag, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.56 / 3.00
*Space group*	P 2₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	99.65, 102.472, 53.034, 90, 90, 90
*R / R_free (%)*	22.9 / 28.8

Other elements in 7kle:

The structure of Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp (pdb code 7kle). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp, PDB code: 7kle:

Fluorine binding site 1 out of 1 in 7kle

Go back to

Fluorine Binding Sites List in 7kle

Fluorine binding site 1 out of 1 in the Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Ternary Structure of DPO4 Bound to N7MG in the Template Base Paired with Incoming Dctp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
T:F6 b:47.4 occ:1.00	F1'	T:FMG6	0.0	47.4	1.0
	C2'	T:FMG6	1.4	46.5	1.0
	C3'	T:FMG6	2.4	53.9	1.0
	C1'	T:FMG6	2.4	43.8	1.0
	N9	T:FMG6	2.8	39.6	1.0
	C8	T:FMG6	2.9	44.7	1.0
	NH2	A:ARG332	2.9	50.7	1.0
	C4'	T:FMG6	3.1	53.2	1.0
	O4'	T:FMG6	3.1	52.2	1.0
	CZ	A:ARG332	3.4	53.0	1.0
	C5'	T:FMG6	3.4	56.9	1.0
	C8	T:DG7	3.4	37.9	1.0
	NH1	A:ARG332	3.5	55.6	1.0
	O3'	T:FMG6	3.6	55.6	1.0
	N7	T:DG7	3.6	39.8	1.0
	C4	T:FMG6	4.0	42.3	1.0
	OP2	T:DG7	4.0	59.7	1.0
	N7	T:FMG6	4.1	48.8	1.0
	P	T:DG7	4.3	59.4	1.0
	NE	A:ARG332	4.4	63.8	1.0
	N9	T:DG7	4.5	36.3	1.0
	O5'	T:FMG6	4.5	63.9	1.0
	O5'	T:DG7	4.5	52.5	1.0
	O4'	T:DG7	4.6	39.2	1.0
	C5	T:FMG6	4.6	46.6	1.0
	C5	T:DG7	4.7	38.5	1.0
	OP2	T:FMG6	4.9	78.0	1.0
	N3	T:FMG6	5.0	40.0	1.0
	CM7	T:FMG6	5.0	41.3	1.0

Reference:

M.-C.Koag, S.Lee. Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Atp To Be Published.

Page generated: Tue Jul 15 20:51:47 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy