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Fluorine in PDB 7kny: The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528

Protein crystallography data

The structure of The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528, PDB code: 7kny was solved by M.G.Cuypers, P.J.Slavish, S.Jayaraman, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.84 / 2.48
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.541, 89.541, 132.914, 90, 90, 90
R / Rfree (%) 21.1 / 26.8

Other elements in 7kny:

The structure of The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528 also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528 (pdb code 7kny). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528, PDB code: 7kny:

Fluorine binding site 1 out of 1 in 7kny

Go back to Fluorine Binding Sites List in 7kny
Fluorine binding site 1 out of 1 in the The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:101.7
occ:1.00
F25 A:WTG203 0.0 101.7 1.0
C24 A:WTG203 1.4 88.1 1.0
O A:HOH306 2.4 60.0 1.0
C23 A:WTG203 2.4 101.8 1.0
C19 A:WTG203 2.4 86.2 1.0
N16 A:WTG203 2.6 80.4 1.0
C17 A:WTG203 2.9 78.7 1.0
O A:HOH311 3.0 60.3 1.0
C22 A:WTG203 3.7 97.0 1.0
C20 A:WTG203 3.7 90.5 1.0
C14 A:WTG203 3.9 65.0 1.0
OH A:TYR130 4.1 100.5 1.0
C21 A:WTG203 4.2 89.6 1.0
CB A:HIS41 4.2 49.6 1.0
O A:VAL122 4.2 74.2 1.0
O15 A:WTG203 4.3 69.6 1.0
N18 A:WTG203 4.4 86.2 1.0
CG A:HIS41 4.5 49.2 1.0
O A:ALA37 4.6 59.6 1.0
CD2 A:HIS41 4.6 57.6 1.0
CB A:ALA37 4.7 66.3 1.0
NH2 A:ARG124 4.9 80.9 1.0
C A:ALA37 5.0 56.9 1.0

Reference:

M.G.Cuypers, P.J.Slavish, S.Jayaraman, S.W.White. The Crystal Structure of the I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988528 To Be Published.
Page generated: Tue Jul 15 20:52:56 2025

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