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Fluorine in PDB 7kui: Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.

Other elements in 7kui:

The structure of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. (pdb code 7kui). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc., PDB code: 7kui:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7kui

Go back to Fluorine Binding Sites List in 7kui
Fluorine binding site 1 out of 2 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:154.2
occ:1.00
FAH A:ZZX302 0.0 154.2 1.0
CAT A:ZZX302 1.3 154.2 1.0
CAV A:ZZX302 2.4 154.2 1.0
CAJ A:ZZX302 2.4 154.2 1.0
CLAI A:ZZX302 2.9 154.2 1.0
N1 I:DG4 3.6 151.1 1.0
CAL A:ZZX302 3.6 154.2 1.0
CAK A:ZZX302 3.6 154.2 1.0
N4 J:DC35 3.8 149.7 1.0
CG A:GLN151 3.9 152.7 1.0
C6 I:DG4 4.0 151.1 1.0
C4 J:DC35 4.0 149.7 1.0
C2 I:DG4 4.0 151.1 1.0
CAU A:ZZX302 4.1 154.2 1.0
O6 I:DG4 4.2 151.1 1.0
C5 J:DC35 4.2 149.7 1.0
N2 I:DG4 4.3 151.1 1.0
CB A:GLN151 4.3 152.7 1.0
O A:SER150 4.3 153.1 1.0
N3 J:DC35 4.5 149.7 1.0
C5 I:DG4 4.6 151.1 1.0
CA A:GLN151 4.7 152.7 1.0
N3 I:DG4 4.7 151.1 1.0
C4 I:DG4 4.9 151.1 1.0
C6 J:DC35 4.9 149.7 1.0

Fluorine binding site 2 out of 2 in 7kui

Go back to Fluorine Binding Sites List in 7kui
Fluorine binding site 2 out of 2 in the Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048. Cic Region of A Cluster Identified By 3-Dimensional Variability Analysis in Cryosparc. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:F401

b:150.8
occ:1.00
FAH L:ZZX401 0.0 150.8 1.0
CAT L:ZZX401 1.3 150.8 1.0
CAV L:ZZX401 2.4 150.8 1.0
CAJ L:ZZX401 2.4 150.8 1.0
CLAI L:ZZX401 2.9 150.8 1.0
CG E:GLN151 3.3 142.0 1.0
CAL L:ZZX401 3.6 150.8 1.0
CAK L:ZZX401 3.6 150.8 1.0
N1 K:DG4 3.7 142.4 1.0
C2 K:DG4 3.9 142.4 1.0
CB E:GLN151 4.0 142.0 1.0
N4 L:DC35 4.0 149.6 1.0
O E:SER150 4.1 150.2 1.0
N2 K:DG4 4.1 142.4 1.0
CAU L:ZZX401 4.1 150.8 1.0
C4 L:DC35 4.2 149.6 1.0
C6 K:DG4 4.2 142.4 1.0
CA E:GLN151 4.4 142.0 1.0
C5 L:DC35 4.4 149.6 1.0
O6 K:DG4 4.5 142.4 1.0
N3 K:DG4 4.5 142.4 1.0
CD E:GLN151 4.6 142.0 1.0
N3 L:DC35 4.7 149.6 1.0
C5 K:DG4 4.7 142.4 1.0
NE2 E:GLN151 4.8 142.0 1.0
C4 K:DG4 4.8 142.4 1.0
C E:SER150 4.9 150.2 1.0

Reference:

K.K.Pandey, S.Bera, K.Shi, H.Aihara, D.P.Grandgenett, M.J.Rau, A.V.Oleru, J.A.J.Fitzpatrick, A.N.Engelman. Cryo-Em Structure of Rous Sarcoma Virus Cleaved Synaptic Complex (Csc) with Hiv-1 Integrase Strand Transfer Inhibitor Mk-2048 To Be Published.
Page generated: Tue Jul 15 20:56:46 2025

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