Fluorine in PDB 7ky9: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

Enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State:
7.6.2.1;

Other elements in 7ky9:

The structure of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State also contains other interesting chemical elements:

Aluminium	(Al)	1 atom
Magnesium	(Mg)	2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State (pdb code 7ky9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State, PDB code: 7ky9:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7ky9

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Fluorine Binding Sites List in 7ky9

Fluorine binding site 1 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1702 b:315.5 occ:1.00	F1	A:ALF1702	0.0	315.5	1.0
	AL	A:ALF1702	1.8	315.5	1.0
	OE2	A:GLU1193	2.4	285.2	1.0
	F3	A:ALF1702	2.5	315.5	1.0
	F4	A:ALF1702	2.5	315.5	1.0
	CD	A:GLU1193	3.1	285.2	1.0
	OE1	A:GLU1193	3.2	285.2	1.0
	CD	A:PRO844	3.3	275.4	1.0
	F2	A:ALF1702	3.6	315.5	1.0
	CG	A:PRO844	3.8	275.4	1.0
	N7	A:ADP1701	4.4	282.7	1.0
	O	A:GLN842	4.4	286.9	1.0
	CG	A:GLU1193	4.5	285.2	1.0
	N	A:PRO844	4.5	275.4	1.0
	CA	A:SER843	4.6	282.2	1.0
	OD1	A:ASP845	4.8	294.5	1.0

Fluorine binding site 2 out of 4 in 7ky9

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Fluorine Binding Sites List in 7ky9

Fluorine binding site 2 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1702 b:315.5 occ:1.00	F2	A:ALF1702	0.0	315.5	1.0
	AL	A:ALF1702	1.8	315.5	1.0
	F3	A:ALF1702	2.5	315.5	1.0
	F4	A:ALF1702	2.5	315.5	1.0
	O2B	A:ADP1701	3.3	282.7	1.0
	F1	A:ALF1702	3.6	315.5	1.0
	O1B	A:ADP1701	3.7	282.7	1.0
	PB	A:ADP1701	4.1	282.7	1.0
	O1A	A:ADP1701	4.1	282.7	1.0
	OE1	A:GLU1193	4.4	285.2	1.0
	N7	A:ADP1701	4.5	282.7	1.0
	MG	A:MG1703	4.5	293.7	1.0
	CE2	A:PHE887	4.5	285.9	1.0
	C8	A:ADP1701	4.6	282.7	1.0
	CG2	A:THR714	4.6	239.6	1.0
	OE2	A:GLU1193	4.7	285.2	1.0
	CZ	A:PHE887	4.8	285.9	1.0
	CD	A:GLU1193	4.9	285.2	1.0

Fluorine binding site 3 out of 4 in 7ky9

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Fluorine Binding Sites List in 7ky9

Fluorine binding site 3 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1702 b:315.5 occ:1.00	F3	A:ALF1702	0.0	315.5	1.0
	AL	A:ALF1702	1.8	315.5	1.0
	OE1	A:GLU1193	2.2	285.2	1.0
	F2	A:ALF1702	2.5	315.5	1.0
	F1	A:ALF1702	2.5	315.5	1.0
	CD	A:GLU1193	3.1	285.2	1.0
	CG2	A:THR714	3.2	239.6	1.0
	OE2	A:GLU1193	3.2	285.2	1.0
	F4	A:ALF1702	3.6	315.5	1.0
	MG	A:MG1703	4.1	293.7	1.0
	CB	A:THR714	4.5	239.6	1.0
	CG	A:GLU1193	4.5	285.2	1.0
	O1A	A:ADP1701	4.7	282.7	1.0
	CB	A:GLU1193	4.9	285.2	1.0

Fluorine binding site 4 out of 4 in 7ky9

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Fluorine Binding Sites List in 7ky9

Fluorine binding site 4 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1702 b:315.5 occ:1.00	F4	A:ALF1702	0.0	315.5	1.0
	AL	A:ALF1702	1.8	315.5	1.0
	F1	A:ALF1702	2.5	315.5	1.0
	F2	A:ALF1702	2.5	315.5	1.0
	N7	A:ADP1701	2.6	282.7	1.0
	C8	A:ADP1701	3.4	282.7	1.0
	F3	A:ALF1702	3.6	315.5	1.0
	C5	A:ADP1701	3.7	282.7	1.0
	OE2	A:GLU1193	4.1	285.2	1.0
	N6	A:ADP1701	4.2	282.7	1.0
	C6	A:ADP1701	4.5	282.7	1.0
	O2B	A:ADP1701	4.5	282.7	1.0
	N9	A:ADP1701	4.7	282.7	1.0
	CD2	A:PHE887	4.7	285.9	1.0
	CE2	A:PHE887	4.8	285.9	1.0
	C4	A:ADP1701	4.9	282.7	1.0
	OE1	A:GLU1193	5.0	285.2	1.0
	CD	A:GLU1193	5.0	285.2	1.0

Reference:

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163

Page generated: Tue Jul 15 20:59:17 2025

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