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Fluorine in PDB 7mty: The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569

Protein crystallography data

The structure of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569, PDB code: 7mty was solved by M.G.Cuypers, J.P.Slavish, Z.Rankovic, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.44 / 2.38
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.73, 89.73, 134.023, 90, 90, 90
R / Rfree (%) 22 / 25.8

Other elements in 7mty:

The structure of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569 also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569 (pdb code 7mty). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569, PDB code: 7mty:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7mty

Go back to Fluorine Binding Sites List in 7mty
Fluorine binding site 1 out of 2 in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:87.5
occ:1.00
F21 A:W5V404 0.0 87.5 1.0
C20 A:W5V404 1.4 110.8 1.0
C19 A:W5V404 2.4 109.8 1.0
C22 A:W5V404 2.4 116.3 1.0
C17 A:W5V404 2.8 91.4 1.0
N18 A:W5V404 3.5 95.3 1.0
N16 A:W5V404 3.6 74.2 1.0
C23 A:W5V404 3.7 116.1 1.0
C25 A:W5V404 3.7 113.2 1.0
C24 A:W5V404 4.1 106.0 1.0
C11 A:W5V404 4.6 85.0 1.0
C14 A:W5V404 4.6 74.3 1.0
OH A:TYR130 4.7 75.5 1.0
F26 A:W5V404 4.8 88.0 1.0

Fluorine binding site 2 out of 2 in 7mty

Go back to Fluorine Binding Sites List in 7mty
Fluorine binding site 2 out of 2 in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:88.0
occ:1.00
F26 A:W5V404 0.0 88.0 1.0
C25 A:W5V404 1.4 113.2 1.0
C24 A:W5V404 2.4 106.0 1.0
C19 A:W5V404 2.4 109.8 1.0
C17 A:W5V404 2.8 91.4 1.0
N16 A:W5V404 3.5 74.2 1.0
N18 A:W5V404 3.6 95.3 1.0
C23 A:W5V404 3.6 116.1 1.0
C20 A:W5V404 3.7 110.8 1.0
CG1 A:ILE38 3.7 62.6 1.0
CA A:ILE38 4.0 64.0 1.0
C22 A:W5V404 4.1 116.3 1.0
CB A:ILE38 4.3 60.3 1.0
N A:ILE38 4.3 62.6 1.0
CB A:HIS41 4.3 59.3 1.0
CG A:HIS41 4.5 61.7 1.0
CG2 A:ILE38 4.5 77.9 1.0
C14 A:W5V404 4.5 74.3 1.0
O A:ALA37 4.5 64.4 1.0
C A:ALA37 4.6 65.6 1.0
ND1 A:HIS41 4.6 64.4 1.0
C11 A:W5V404 4.6 85.0 1.0
CD1 A:ILE38 4.7 68.8 1.0
F21 A:W5V404 4.8 87.5 1.0
O A:HOH508 4.8 64.0 1.0

Reference:

M.G.Cuypers, J.P.Slavish, Z.Rankovic, S.W.White. The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988569 To Be Published.
Page generated: Tue Jul 15 21:54:14 2025

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