Fluorine in PDB 7op5: Cryo-Em Structure of P5B-Atpase E2P

The structure of Cryo-Em Structure of P5B-Atpase E2P also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of P5B-Atpase E2P (pdb code 7op5). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of P5B-Atpase E2P, PDB code: 7op5:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of P5B-Atpase E2P


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range: probe atom residue distance (Å) B Occ A:F1401 b:34.9 occ:1.00 F1 A:BEF1401 0.0 34.9 1.0 BE A:BEF1401 1.5 34.9 1.0 MG A:MG1402 2.2 37.3 1.0 OD1 A:ASP680 2.4 31.9 1.0 F3 A:BEF1401 2.5 34.9 1.0 F2 A:BEF1401 2.6 34.9 1.0 OD1 A:ASP1099 3.0 45.0 1.0 CG A:ASP680 3.1 31.9 1.0 OD1 A:ASP1095 3.4 46.8 1.0 OD2 A:ASP680 3.6 31.9 1.0 CG A:ASP1099 3.6 45.0 1.0 N A:GLY1096 4.1 52.8 1.0 NZ A:LYS1076 4.1 30.0 1.0 CB A:ASP680 4.2 31.9 1.0 CB A:ASP1099 4.2 45.0 1.0 OD2 A:ASP1099 4.3 45.0 1.0 CA A:GLY1096 4.4 52.8 1.0 CB A:ASN1098 4.5 42.8 1.0 N A:ASP1099 4.5 45.0 1.0 ND2 A:ASN1098 4.6 42.8 1.0 CG A:ASP1095 4.6 46.8 1.0 O A:THR682 4.6 37.2 1.0 N A:ASP1095 4.7 46.8 1.0 C A:GLY1096 4.9 52.8 1.0 O A:GLY1096 4.9 52.8 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of P5B-Atpase E2P


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range: probe atom residue distance (Å) B Occ A:F1401 b:34.9 occ:1.00 F2 A:BEF1401 0.0 34.9 1.0 BE A:BEF1401 1.6 34.9 1.0 MG A:MG1402 1.9 37.3 1.0 F3 A:BEF1401 2.5 34.9 1.0 F1 A:BEF1401 2.6 34.9 1.0 O A:THR682 2.8 37.2 1.0 OD1 A:ASP1095 3.1 46.8 1.0 CG2 A:THR682 3.4 37.2 1.0 OD2 A:ASP680 3.8 31.9 1.0 C A:THR682 4.0 37.2 1.0 OD1 A:ASP680 4.0 31.9 1.0 CG A:ASP1095 4.1 46.8 1.0 CG A:ASP680 4.1 31.9 1.0 OD2 A:ASP1095 4.2 46.8 1.0 CB A:THR682 4.4 37.2 1.0 CA A:THR682 4.7 37.2 1.0 OG1 A:THR682 4.7 37.2 1.0 N A:GLY1096 4.8 52.8 1.0 O A:SER499 4.8 51.6 1.0 CA A:GLY1096 4.9 52.8 1.0 N A:THR682 4.9 37.2 1.0 CA A:GLY503 4.9 44.4 1.0 N A:GLY683 5.0 36.7 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of P5B-Atpase E2P


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range: probe atom residue distance (Å) B Occ A:F1401 b:34.9 occ:1.00 F3 A:BEF1401 0.0 34.9 1.0 BE A:BEF1401 1.5 34.9 1.0 F2 A:BEF1401 2.5 34.9 1.0 F1 A:BEF1401 2.5 34.9 1.0 OD2 A:ASP680 2.7 31.9 1.0 OD1 A:ASP680 2.7 31.9 1.0 MG A:MG1402 3.0 37.3 1.0 CG A:ASP680 3.1 31.9 1.0 CG2 A:THR682 3.2 37.2 1.0 O A:THR682 4.1 37.2 1.0 CA A:GLY503 4.2 44.4 1.0 ND2 A:ASN1098 4.2 42.8 1.0 NZ A:LYS1076 4.4 30.0 1.0 CB A:ASP680 4.6 31.9 1.0 N A:GLY958 4.6 28.1 1.0 N A:THR682 4.6 37.2 1.0 CB A:THR682 4.7 37.2 1.0 OG1 A:THR957 4.8 27.6 1.0 C A:THR682 4.9 37.2 1.0 O A:GLY503 4.9 44.4 1.0 OD1 A:ASP1095 5.0 46.8 1.0 CA A:THR682 5.0 37.2 1.0 CA A:THR957 5.0 27.6 1.0

L.Ping, K.T.Wang, N.Salustros, C.Gronberg, P.E.Gourdon. Structure and Transport Mechanism of P5B-Atpases To Be Published.