Fluorine in PDB 7op8: Cryo-Em Structure of P5B-Atpase E2PINHIBIT

The structure of Cryo-Em Structure of P5B-Atpase E2PINHIBIT also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT (pdb code 7op8). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT, PDB code: 7op8:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of P5B-Atpase E2PINHIBIT within 5.0Å range: probe atom residue distance (Å) B Occ A:F1401 b:28.7 occ:1.00 F1 A:BEF1401 0.0 28.7 1.0 BE A:BEF1401 1.5 28.7 1.0 MG A:MG1402 2.0 33.3 1.0 F3 A:BEF1401 2.5 28.7 1.0 F2 A:BEF1401 2.6 28.7 1.0 OD1 A:ASP1095 2.8 33.7 1.0 N A:GLY1096 3.3 33.9 1.0 CA A:GLY1096 3.3 33.9 1.0 OD2 A:ASP1099 3.6 37.6 1.0 OD2 A:ASP680 3.6 30.4 1.0 O A:SER499 3.7 29.9 1.0 O A:THR682 4.0 29.4 1.0 CG A:ASP1095 4.0 33.7 1.0 OD1 A:ASN1098 4.0 32.5 1.0 CG A:ASP680 4.1 30.4 1.0 O A:MET500 4.2 36.4 1.0 CA A:MET500 4.2 36.4 1.0 OD1 A:ASP680 4.3 30.4 1.0 C A:GLY1096 4.3 33.9 1.0 CG A:ASP1099 4.5 37.6 1.0 OG1 A:THR682 4.5 29.4 1.0 C A:ASP1095 4.5 33.7 1.0 OD2 A:ASP1095 4.5 33.7 1.0 C A:MET500 4.6 36.4 1.0 CB A:ASN1098 4.6 32.5 1.0 C A:SER499 4.7 29.9 1.0 O A:THR502 4.7 31.0 1.0 CG A:ASN1098 4.8 32.5 1.0 N A:ASP1095 4.9 33.7 1.0 N A:ALA1097 4.9 34.6 1.0 O A:GLY1096 5.0 33.9 1.0 N A:MET500 5.0 36.4 1.0 CB A:ASP680 5.0 30.4 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of P5B-Atpase E2PINHIBIT within 5.0Å range: probe atom residue distance (Å) B Occ A:F1401 b:28.7 occ:1.00 F2 A:BEF1401 0.0 28.7 1.0 BE A:BEF1401 1.6 28.7 1.0 MG A:MG1402 2.1 33.3 1.0 OG1 A:THR682 2.3 29.4 1.0 F3 A:BEF1401 2.5 28.7 1.0 F1 A:BEF1401 2.6 28.7 1.0 OD1 A:ASP680 2.6 30.4 1.0 O A:THR682 3.1 29.4 1.0 CG A:ASP680 3.2 30.4 1.0 OD2 A:ASP680 3.4 30.4 1.0 CB A:THR682 3.6 29.4 1.0 N A:THR682 3.7 29.4 1.0 CA A:GLY503 3.8 29.9 1.0 O A:SER499 3.8 29.9 1.0 C A:THR682 3.9 29.4 1.0 CA A:THR682 3.9 29.4 1.0 OD1 A:ASP1095 4.4 33.7 1.0 O A:THR502 4.4 31.0 1.0 CB A:ASP680 4.4 30.4 1.0 N A:LYS681 4.6 31.3 1.0 O A:GLY503 4.6 29.9 1.0 CG2 A:THR682 4.7 29.4 1.0 C A:GLY503 4.7 29.9 1.0 N A:GLY503 4.7 29.9 1.0 C A:LYS681 4.7 31.3 1.0 OD1 A:ASN1098 4.8 32.5 1.0 C A:THR502 4.9 31.0 1.0 C A:SER499 5.0 29.9 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of P5B-Atpase E2PINHIBIT within 5.0Å range: probe atom residue distance (Å) B Occ A:F1401 b:28.7 occ:1.00 F3 A:BEF1401 0.0 28.7 1.0 BE A:BEF1401 1.5 28.7 1.0 MG A:MG1402 2.0 33.3 1.0 O A:THR682 2.2 29.4 1.0 OD1 A:ASP1095 2.2 33.7 1.0 F2 A:BEF1401 2.5 28.7 1.0 F1 A:BEF1401 2.5 28.7 1.0 CG A:ASP680 3.0 30.4 1.0 CG A:ASP1095 3.1 33.7 1.0 OD1 A:ASP680 3.1 30.4 1.0 OD2 A:ASP1095 3.3 33.7 1.0 OD2 A:ASP680 3.4 30.4 1.0 C A:THR682 3.4 29.4 1.0 CB A:ASP680 3.4 30.4 1.0 OG1 A:THR684 3.6 31.9 1.0 OD2 A:ASP1099 3.9 37.6 1.0 N A:THR684 3.9 31.9 1.0 OG1 A:THR682 4.0 29.4 1.0 N A:THR682 4.0 29.4 1.0 CA A:THR682 4.2 29.4 1.0 CB A:THR684 4.2 31.9 1.0 N A:GLY683 4.3 28.7 1.0 N A:GLY1096 4.3 33.9 1.0 CB A:ASP1095 4.4 33.7 1.0 N A:ASP1095 4.4 33.7 1.0 CA A:GLY683 4.5 28.7 1.0 N A:LYS681 4.5 31.3 1.0 C A:GLY683 4.5 28.7 1.0 C A:LYS681 4.7 31.3 1.0 CB A:THR682 4.7 29.4 1.0 CA A:THR684 4.7 31.9 1.0 CA A:ASP680 4.7 30.4 1.0 CA A:ASP1095 4.9 33.7 1.0 O A:SER499 4.9 29.9 1.0 C A:ASP680 4.9 30.4 1.0

L.Ping, G.Pontus. Structure and Transport Mechanism of P5B-Atpases To Be Published.