Fluorine in PDB 7pvk: X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
Protein crystallography data
The structure of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg., PDB code: 7pvk
was solved by
C.A.Schmitz,
M.Madej,
J.Potempa,
M.Sola,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
51.90 /
2.40
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
94.63,
103.77,
132.21,
90,
98.5,
90
|
|
R / Rfree (%)
|
19.4 /
22.3
|
Other elements in 7pvk:
The structure of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
(pdb code 7pvk). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg., PDB code: 7pvk:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 1 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F602
b:68.1
occ:1.00
|
F1
|
A:BEF602
|
0.0
|
68.1
|
1.0
|
|
BE
|
A:BEF602
|
1.5
|
71.6
|
1.0
|
|
MG
|
A:MG601
|
1.9
|
73.8
|
1.0
|
|
O
|
A:HOH720
|
2.3
|
65.6
|
1.0
|
|
OD2
|
A:ASP58
|
2.5
|
115.9
|
1.0
|
|
F3
|
A:BEF602
|
2.5
|
75.1
|
1.0
|
|
HB3
|
A:ASN60
|
2.6
|
111.2
|
1.0
|
|
F2
|
A:BEF602
|
2.6
|
80.1
|
1.0
|
|
HZ2
|
A:LYS87
|
2.7
|
133.7
|
1.0
|
|
OD1
|
A:ASP58
|
2.7
|
116.8
|
1.0
|
|
O
|
A:ASN60
|
2.9
|
96.2
|
1.0
|
|
CG
|
A:ASP58
|
3.0
|
110.6
|
1.0
|
|
H
|
A:ASN60
|
3.1
|
111.7
|
1.0
|
|
HE3
|
A:LYS87
|
3.3
|
132.5
|
1.0
|
|
NZ
|
A:LYS87
|
3.4
|
111.3
|
1.0
|
|
CB
|
A:ASN60
|
3.4
|
93.1
|
1.0
|
|
HD2
|
A:LYS87
|
3.6
|
130.9
|
1.0
|
|
HZ1
|
A:LYS87
|
3.6
|
133.7
|
1.0
|
|
N
|
A:ASN60
|
3.7
|
93.4
|
1.0
|
|
C
|
A:ASN60
|
3.7
|
95.1
|
1.0
|
|
CE
|
A:LYS87
|
3.7
|
110.3
|
1.0
|
|
HZ2
|
A:LYS108
|
3.8
|
100.5
|
1.0
|
|
CA
|
A:ASN60
|
3.8
|
93.5
|
1.0
|
|
HB2
|
A:ASN60
|
3.9
|
111.2
|
1.0
|
|
HD22
|
A:ASN60
|
3.9
|
153.2
|
1.0
|
|
OD1
|
A:ASP15
|
3.9
|
97.0
|
1.0
|
|
HG3
|
A:LYS87
|
4.1
|
131.8
|
1.0
|
|
HG1
|
A:THR86
|
4.1
|
95.2
|
1.0
|
|
CD
|
A:LYS87
|
4.1
|
109.0
|
1.0
|
|
HZ3
|
A:LYS87
|
4.2
|
133.7
|
1.0
|
|
HZ3
|
A:LYS108
|
4.2
|
100.5
|
1.0
|
|
H
|
A:LYS87
|
4.3
|
114.2
|
1.0
|
|
NZ
|
A:LYS108
|
4.4
|
83.7
|
1.0
|
|
CB
|
A:ASP58
|
4.5
|
99.2
|
1.0
|
|
ND2
|
A:ASN60
|
4.5
|
127.6
|
1.0
|
|
CG
|
A:ASN60
|
4.5
|
112.0
|
1.0
|
|
HA
|
A:THR86
|
4.6
|
92.8
|
1.0
|
|
HE2
|
A:LYS87
|
4.6
|
132.5
|
1.0
|
|
CG
|
A:LYS87
|
4.7
|
109.8
|
1.0
|
|
HZ1
|
A:LYS108
|
4.7
|
100.5
|
1.0
|
|
OD2
|
A:ASP15
|
4.7
|
101.3
|
1.0
|
|
CG
|
A:ASP15
|
4.7
|
102.8
|
1.0
|
|
H
|
A:GLU59
|
4.8
|
109.8
|
1.0
|
|
HA
|
A:ASN60
|
4.8
|
111.7
|
1.0
|
|
HB3
|
A:ASP58
|
4.8
|
119.2
|
1.0
|
|
OD2
|
A:ASP14
|
4.8
|
91.5
|
1.0
|
|
HG3
|
A:MSE61
|
4.8
|
143.7
|
1.0
|
|
C
|
A:GLU59
|
4.8
|
98.2
|
1.0
|
|
OD1
|
A:ASP14
|
4.9
|
98.4
|
1.0
|
|
HB2
|
A:ASP58
|
4.9
|
119.2
|
1.0
|
|
N
|
A:GLU59
|
4.9
|
91.4
|
1.0
|
|
OE1
|
A:GLU16
|
4.9
|
110.0
|
1.0
|
|
OG1
|
A:THR86
|
5.0
|
79.2
|
1.0
|
|
N
|
A:MSE61
|
5.0
|
133.2
|
1.0
|
|
HG3
|
A:GLU16
|
5.0
|
132.2
|
1.0
|
|
HD3
|
A:LYS87
|
5.0
|
130.9
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 2 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F602
b:80.1
occ:1.00
|
F2
|
A:BEF602
|
0.0
|
80.1
|
1.0
|
|
BE
|
A:BEF602
|
1.6
|
71.6
|
1.0
|
|
H
|
A:LYS87
|
2.1
|
114.2
|
1.0
|
|
HZ2
|
A:LYS108
|
2.2
|
100.5
|
1.0
|
|
OD1
|
A:ASP58
|
2.3
|
116.8
|
1.0
|
|
HG3
|
A:LYS87
|
2.4
|
131.8
|
1.0
|
|
HA
|
A:THR86
|
2.4
|
92.8
|
1.0
|
|
F3
|
A:BEF602
|
2.5
|
75.1
|
1.0
|
|
F1
|
A:BEF602
|
2.6
|
68.1
|
1.0
|
|
HD2
|
A:LYS108
|
2.7
|
94.5
|
1.0
|
|
N
|
A:LYS87
|
2.9
|
95.1
|
1.0
|
|
HG1
|
A:THR86
|
2.9
|
95.2
|
1.0
|
|
NZ
|
A:LYS108
|
3.0
|
83.7
|
1.0
|
|
HZ3
|
A:LYS108
|
3.1
|
100.5
|
1.0
|
|
HE3
|
A:LYS87
|
3.1
|
132.5
|
1.0
|
|
CA
|
A:THR86
|
3.2
|
77.3
|
1.0
|
|
CG
|
A:LYS87
|
3.2
|
109.8
|
1.0
|
|
CG
|
A:ASP58
|
3.4
|
110.6
|
1.0
|
|
HD2
|
A:LYS87
|
3.4
|
130.9
|
1.0
|
|
C
|
A:THR86
|
3.5
|
74.4
|
1.0
|
|
CD
|
A:LYS108
|
3.5
|
78.7
|
1.0
|
|
OG1
|
A:THR86
|
3.6
|
79.2
|
1.0
|
|
HZ1
|
A:LYS108
|
3.6
|
100.5
|
1.0
|
|
CD
|
A:LYS87
|
3.6
|
109.0
|
1.0
|
|
O
|
A:HOH720
|
3.7
|
65.6
|
1.0
|
|
CE
|
A:LYS108
|
3.7
|
80.6
|
1.0
|
|
CE
|
A:LYS87
|
3.8
|
110.3
|
1.0
|
|
OD2
|
A:ASP58
|
3.8
|
115.9
|
1.0
|
|
HD3
|
A:LYS108
|
3.8
|
94.5
|
1.0
|
|
CB
|
A:THR86
|
3.9
|
78.4
|
1.0
|
|
CB
|
A:LYS87
|
3.9
|
108.3
|
1.0
|
|
HG2
|
A:LYS87
|
3.9
|
131.8
|
1.0
|
|
CA
|
A:LYS87
|
4.0
|
104.5
|
1.0
|
|
HB
|
A:THR86
|
4.0
|
94.2
|
1.0
|
|
HE3
|
A:LYS108
|
4.0
|
96.8
|
1.0
|
|
HB2
|
A:LYS87
|
4.0
|
130.0
|
1.0
|
|
HZ2
|
A:LYS87
|
4.0
|
133.7
|
1.0
|
|
O
|
A:ILE85
|
4.2
|
69.9
|
1.0
|
|
H
|
A:ASN60
|
4.2
|
111.7
|
1.0
|
|
N
|
A:THR86
|
4.4
|
73.9
|
1.0
|
|
MG
|
A:MG601
|
4.4
|
73.8
|
1.0
|
|
H
|
A:GLU59
|
4.4
|
109.8
|
1.0
|
|
NZ
|
A:LYS87
|
4.4
|
111.3
|
1.0
|
|
HA
|
A:LYS87
|
4.4
|
125.5
|
1.0
|
|
H
|
A:SER88
|
4.5
|
136.6
|
1.0
|
|
OD2
|
A:ASP14
|
4.5
|
91.5
|
1.0
|
|
HB3
|
A:ASN60
|
4.5
|
111.2
|
1.0
|
|
HE2
|
A:LYS87
|
4.6
|
132.5
|
1.0
|
|
HE2
|
A:LYS108
|
4.6
|
96.8
|
1.0
|
|
HD3
|
A:LYS87
|
4.6
|
130.9
|
1.0
|
|
CB
|
A:ASP58
|
4.6
|
99.2
|
1.0
|
|
O
|
A:THR86
|
4.7
|
71.7
|
1.0
|
|
HB2
|
A:ASP58
|
4.7
|
119.2
|
1.0
|
|
HG3
|
A:LYS108
|
4.7
|
95.7
|
1.0
|
|
CG
|
A:LYS108
|
4.7
|
79.7
|
1.0
|
|
C
|
A:ILE85
|
4.7
|
72.8
|
1.0
|
|
HB2
|
A:LYS108
|
4.7
|
95.0
|
1.0
|
|
HA
|
A:ASP58
|
4.8
|
101.9
|
1.0
|
|
HZ1
|
A:LYS87
|
4.8
|
133.7
|
1.0
|
|
HB3
|
A:LYS87
|
4.8
|
130.0
|
1.0
|
|
N
|
A:GLU59
|
5.0
|
91.4
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 3 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F602
b:75.1
occ:1.00
|
F3
|
A:BEF602
|
0.0
|
75.1
|
1.0
|
|
BE
|
A:BEF602
|
1.5
|
71.6
|
1.0
|
|
H
|
A:ASN60
|
1.9
|
111.7
|
1.0
|
|
HG1
|
A:THR86
|
1.9
|
95.2
|
1.0
|
|
F2
|
A:BEF602
|
2.5
|
80.1
|
1.0
|
|
OD1
|
A:ASP58
|
2.5
|
116.8
|
1.0
|
|
F1
|
A:BEF602
|
2.5
|
68.1
|
1.0
|
|
OG1
|
A:THR86
|
2.6
|
79.2
|
1.0
|
|
N
|
A:ASN60
|
2.7
|
93.4
|
1.0
|
|
H
|
A:GLU59
|
2.8
|
109.8
|
1.0
|
|
HB3
|
A:GLU59
|
2.8
|
109.8
|
1.0
|
|
HB
|
A:THR86
|
3.0
|
94.2
|
1.0
|
|
CG
|
A:ASP58
|
3.1
|
110.6
|
1.0
|
|
HB3
|
A:ASN60
|
3.1
|
111.2
|
1.0
|
|
HA
|
A:THR86
|
3.2
|
92.8
|
1.0
|
|
N
|
A:GLU59
|
3.2
|
91.4
|
1.0
|
|
H
|
A:LYS87
|
3.2
|
114.2
|
1.0
|
|
CB
|
A:THR86
|
3.3
|
78.4
|
1.0
|
|
OD2
|
A:ASP58
|
3.4
|
115.9
|
1.0
|
|
HB2
|
A:ASN60
|
3.4
|
111.2
|
1.0
|
|
CB
|
A:GLU59
|
3.5
|
91.4
|
1.0
|
|
CB
|
A:ASN60
|
3.6
|
93.1
|
1.0
|
|
CA
|
A:GLU59
|
3.6
|
90.7
|
1.0
|
|
C
|
A:GLU59
|
3.6
|
98.2
|
1.0
|
|
CA
|
A:ASN60
|
3.6
|
93.5
|
1.0
|
|
CA
|
A:THR86
|
3.7
|
77.3
|
1.0
|
|
HB2
|
A:GLU59
|
3.7
|
109.8
|
1.0
|
|
N
|
A:LYS87
|
3.9
|
95.1
|
1.0
|
|
C
|
A:ASP58
|
4.0
|
84.6
|
1.0
|
|
MG
|
A:MG601
|
4.1
|
73.8
|
1.0
|
|
H
|
A:SER88
|
4.1
|
136.6
|
1.0
|
|
HD2
|
A:LYS87
|
4.1
|
130.9
|
1.0
|
|
O
|
A:ASN60
|
4.2
|
96.2
|
1.0
|
|
HZ2
|
A:LYS108
|
4.2
|
100.5
|
1.0
|
|
HA
|
A:ASP58
|
4.2
|
101.9
|
1.0
|
|
HG3
|
A:LYS87
|
4.3
|
131.8
|
1.0
|
|
C
|
A:ASN60
|
4.3
|
95.1
|
1.0
|
|
C
|
A:THR86
|
4.4
|
74.4
|
1.0
|
|
CB
|
A:ASP58
|
4.4
|
99.2
|
1.0
|
|
HA
|
A:ASN60
|
4.4
|
111.7
|
1.0
|
|
CA
|
A:ASP58
|
4.5
|
84.8
|
1.0
|
|
HZ2
|
A:LYS87
|
4.5
|
133.7
|
1.0
|
|
HA
|
A:GLU59
|
4.6
|
109.0
|
1.0
|
|
OE1
|
A:GLU59
|
4.6
|
95.8
|
1.0
|
|
HB2
|
A:LYS87
|
4.7
|
130.0
|
1.0
|
|
CG2
|
A:THR86
|
4.7
|
76.2
|
1.0
|
|
O
|
A:ILE85
|
4.7
|
69.9
|
1.0
|
|
O
|
A:HOH720
|
4.7
|
65.6
|
1.0
|
|
O
|
A:GLU59
|
4.8
|
92.1
|
1.0
|
|
HG21
|
A:THR86
|
4.8
|
91.5
|
1.0
|
|
HE3
|
A:LYS87
|
4.8
|
132.5
|
1.0
|
|
CG
|
A:GLU59
|
4.8
|
93.8
|
1.0
|
|
CD
|
A:LYS87
|
4.9
|
109.0
|
1.0
|
|
HB2
|
A:ASP58
|
4.9
|
119.2
|
1.0
|
|
CG
|
A:LYS87
|
4.9
|
109.8
|
1.0
|
|
O
|
A:ASP58
|
4.9
|
85.8
|
1.0
|
|
N
|
A:SER88
|
4.9
|
113.8
|
1.0
|
|
HB3
|
A:SER88
|
4.9
|
131.0
|
1.0
|
|
N
|
A:THR86
|
5.0
|
73.9
|
1.0
|
|
HD2
|
A:LYS108
|
5.0
|
94.5
|
1.0
|
|
HB3
|
A:ASP58
|
5.0
|
119.2
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 4 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F602
b:113.2
occ:1.00
|
F1
|
B:BEF602
|
0.0
|
113.2
|
1.0
|
|
BE
|
B:BEF602
|
1.5
|
114.5
|
1.0
|
|
MG
|
B:MG601
|
1.9
|
114.1
|
1.0
|
|
OD2
|
B:ASP58
|
2.5
|
121.8
|
1.0
|
|
F3
|
B:BEF602
|
2.5
|
114.3
|
1.0
|
|
O
|
B:ASN60
|
2.6
|
120.1
|
1.0
|
|
F2
|
B:BEF602
|
2.6
|
110.4
|
1.0
|
|
O
|
B:HOH707
|
2.6
|
87.7
|
1.0
|
|
HB3
|
B:ASN60
|
2.7
|
161.6
|
1.0
|
|
OD1
|
B:ASP58
|
2.8
|
119.9
|
1.0
|
|
HE3
|
B:LYS87
|
3.0
|
130.3
|
1.0
|
|
CG
|
B:ASP58
|
3.0
|
120.2
|
1.0
|
|
H
|
B:ASN60
|
3.1
|
166.1
|
1.0
|
|
CB
|
B:ASN60
|
3.4
|
134.6
|
1.0
|
|
C
|
B:ASN60
|
3.5
|
128.7
|
1.0
|
|
HB2
|
B:ASN60
|
3.5
|
161.6
|
1.0
|
|
HZ3
|
B:LYS108
|
3.5
|
151.7
|
1.0
|
|
OD1
|
B:ASP15
|
3.6
|
153.7
|
1.0
|
|
N
|
B:ASN60
|
3.6
|
138.3
|
1.0
|
|
CA
|
B:ASN60
|
3.7
|
134.0
|
1.0
|
|
HZ2
|
B:LYS87
|
3.7
|
131.6
|
1.0
|
|
HZ2
|
B:LYS108
|
3.8
|
151.7
|
1.0
|
|
HG2
|
B:LYS87
|
3.8
|
142.1
|
1.0
|
|
CE
|
B:LYS87
|
3.8
|
108.5
|
1.0
|
|
NZ
|
B:LYS108
|
4.0
|
126.4
|
1.0
|
|
HZ1
|
B:LYS87
|
4.0
|
131.6
|
1.0
|
|
NZ
|
B:LYS87
|
4.1
|
109.6
|
1.0
|
|
HZ1
|
B:LYS108
|
4.1
|
151.7
|
1.0
|
|
OG1
|
B:THR86
|
4.3
|
143.4
|
1.0
|
|
H
|
B:LYS87
|
4.3
|
178.8
|
1.0
|
|
HD2
|
B:LYS87
|
4.3
|
136.4
|
1.0
|
|
OD2
|
B:ASP15
|
4.4
|
170.9
|
1.0
|
|
CG
|
B:ASP15
|
4.4
|
149.3
|
1.0
|
|
CD
|
B:LYS87
|
4.5
|
113.6
|
1.0
|
|
HD22
|
B:ASN60
|
4.5
|
163.4
|
1.0
|
|
HG1
|
B:THR86
|
4.5
|
172.2
|
1.0
|
|
CB
|
B:ASP58
|
4.5
|
117.9
|
1.0
|
|
OD1
|
B:ASP14
|
4.5
|
148.8
|
1.0
|
|
HG3
|
B:MSE61
|
4.5
|
171.3
|
1.0
|
|
HE2
|
B:LYS87
|
4.5
|
130.3
|
1.0
|
|
CG
|
B:LYS87
|
4.6
|
118.4
|
1.0
|
|
HA
|
B:ASN60
|
4.6
|
160.9
|
1.0
|
|
HG3
|
B:GLU16
|
4.7
|
184.6
|
1.0
|
|
H
|
B:GLU59
|
4.7
|
148.1
|
1.0
|
|
CG
|
B:ASN60
|
4.7
|
135.6
|
1.0
|
|
N
|
B:MSE61
|
4.7
|
133.3
|
1.0
|
|
C
|
B:GLU59
|
4.7
|
138.4
|
1.0
|
|
HA
|
B:THR86
|
4.8
|
147.8
|
1.0
|
|
HB3
|
B:ASP58
|
4.8
|
141.6
|
1.0
|
|
OD2
|
B:ASP14
|
4.9
|
142.9
|
1.0
|
|
HB2
|
B:ASP58
|
4.9
|
141.6
|
1.0
|
|
N
|
B:GLU59
|
4.9
|
123.4
|
1.0
|
|
HZ3
|
B:LYS87
|
4.9
|
131.6
|
1.0
|
|
HA
|
B:MSE61
|
4.9
|
168.4
|
1.0
|
|
H
|
B:ASP15
|
5.0
|
133.3
|
1.0
|
|
CG
|
B:ASP14
|
5.0
|
147.8
|
1.0
|
|
ND2
|
B:ASN60
|
5.0
|
136.1
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 5 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F602
b:110.4
occ:1.00
|
F2
|
B:BEF602
|
0.0
|
110.4
|
1.0
|
|
H
|
B:ASN60
|
1.5
|
166.1
|
1.0
|
|
BE
|
B:BEF602
|
1.6
|
114.5
|
1.0
|
|
HG1
|
B:THR86
|
2.0
|
172.2
|
1.0
|
|
OG1
|
B:THR86
|
2.0
|
143.4
|
1.0
|
|
OD1
|
B:ASP58
|
2.1
|
119.9
|
1.0
|
|
N
|
B:ASN60
|
2.3
|
138.3
|
1.0
|
|
F3
|
B:BEF602
|
2.6
|
114.3
|
1.0
|
|
F1
|
B:BEF602
|
2.6
|
113.2
|
1.0
|
|
H
|
B:GLU59
|
2.7
|
148.1
|
1.0
|
|
HB3
|
B:GLU59
|
2.7
|
152.8
|
1.0
|
|
HB2
|
B:ASN60
|
2.8
|
161.6
|
1.0
|
|
N
|
B:GLU59
|
3.1
|
123.4
|
1.0
|
|
CG
|
B:ASP58
|
3.2
|
120.2
|
1.0
|
|
CB
|
B:THR86
|
3.2
|
143.5
|
1.0
|
|
CA
|
B:ASN60
|
3.3
|
134.0
|
1.0
|
|
CB
|
B:ASN60
|
3.3
|
134.6
|
1.0
|
|
C
|
B:GLU59
|
3.3
|
138.4
|
1.0
|
|
HB3
|
B:ASN60
|
3.3
|
161.6
|
1.0
|
|
HB
|
B:THR86
|
3.4
|
172.2
|
1.0
|
|
CA
|
B:GLU59
|
3.4
|
128.2
|
1.0
|
|
H
|
B:LYS87
|
3.4
|
178.8
|
1.0
|
|
CB
|
B:GLU59
|
3.4
|
127.3
|
1.0
|
|
HG2
|
B:LYS87
|
3.6
|
142.1
|
1.0
|
|
HA
|
B:THR86
|
3.6
|
147.8
|
1.0
|
|
OD2
|
B:ASP58
|
3.6
|
121.8
|
1.0
|
|
O
|
B:ASN60
|
3.8
|
120.1
|
1.0
|
|
HB2
|
B:GLU59
|
3.8
|
152.8
|
1.0
|
|
MG
|
B:MG601
|
3.9
|
114.1
|
1.0
|
|
C
|
B:ASN60
|
4.0
|
128.7
|
1.0
|
|
CA
|
B:THR86
|
4.0
|
123.1
|
1.0
|
|
C
|
B:ASP58
|
4.0
|
119.9
|
1.0
|
|
HA
|
B:ASN60
|
4.1
|
160.9
|
1.0
|
|
N
|
B:LYS87
|
4.1
|
148.9
|
1.0
|
|
H
|
B:SER88
|
4.1
|
134.9
|
1.0
|
|
HZ2
|
B:LYS108
|
4.1
|
151.7
|
1.0
|
|
OE1
|
B:GLU59
|
4.2
|
123.8
|
1.0
|
|
HE3
|
B:LYS87
|
4.3
|
130.3
|
1.0
|
|
HA
|
B:ASP58
|
4.3
|
141.9
|
1.0
|
|
HA
|
B:GLU59
|
4.4
|
153.9
|
1.0
|
|
CG2
|
B:THR86
|
4.4
|
149.9
|
1.0
|
|
HG21
|
B:THR86
|
4.4
|
180.0
|
1.0
|
|
CB
|
B:ASP58
|
4.4
|
117.9
|
1.0
|
|
O
|
B:GLU59
|
4.4
|
147.9
|
1.0
|
|
CA
|
B:ASP58
|
4.5
|
118.1
|
1.0
|
|
HZ3
|
B:LYS108
|
4.5
|
151.7
|
1.0
|
|
CG
|
B:LYS87
|
4.6
|
118.4
|
1.0
|
|
HB2
|
B:SER88
|
4.6
|
134.6
|
1.0
|
|
C
|
B:THR86
|
4.6
|
111.8
|
1.0
|
|
HG23
|
B:THR86
|
4.7
|
180.0
|
1.0
|
|
CG
|
B:GLU59
|
4.7
|
123.4
|
1.0
|
|
CG
|
B:ASN60
|
4.7
|
135.6
|
1.0
|
|
NZ
|
B:LYS108
|
4.8
|
126.4
|
1.0
|
|
O
|
B:ASP58
|
4.8
|
120.6
|
1.0
|
|
N
|
B:SER88
|
4.9
|
112.3
|
1.0
|
|
CD
|
B:GLU59
|
4.9
|
123.1
|
1.0
|
|
O
|
B:HOH707
|
4.9
|
87.7
|
1.0
|
|
HG3
|
B:LYS87
|
4.9
|
142.1
|
1.0
|
|
HB2
|
B:ASP58
|
5.0
|
141.6
|
1.0
|
|
HB3
|
B:ASP58
|
5.0
|
141.6
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 6 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F602
b:114.3
occ:1.00
|
F3
|
B:BEF602
|
0.0
|
114.3
|
1.0
|
|
BE
|
B:BEF602
|
1.6
|
114.5
|
1.0
|
|
HZ2
|
B:LYS108
|
2.0
|
151.7
|
1.0
|
|
HZ3
|
B:LYS108
|
2.1
|
151.7
|
1.0
|
|
H
|
B:LYS87
|
2.1
|
178.8
|
1.0
|
|
OD1
|
B:ASP58
|
2.3
|
119.9
|
1.0
|
|
NZ
|
B:LYS108
|
2.4
|
126.4
|
1.0
|
|
HA
|
B:THR86
|
2.5
|
147.8
|
1.0
|
|
F1
|
B:BEF602
|
2.5
|
113.2
|
1.0
|
|
F2
|
B:BEF602
|
2.6
|
110.4
|
1.0
|
|
HE3
|
B:LYS87
|
2.7
|
130.3
|
1.0
|
|
N
|
B:LYS87
|
2.9
|
148.9
|
1.0
|
|
HG2
|
B:LYS87
|
2.9
|
142.1
|
1.0
|
|
OG1
|
B:THR86
|
2.9
|
143.4
|
1.0
|
|
HZ1
|
B:LYS108
|
3.0
|
151.7
|
1.0
|
|
HD3
|
B:LYS108
|
3.0
|
148.8
|
1.0
|
|
CG
|
B:ASP58
|
3.1
|
120.2
|
1.0
|
|
CA
|
B:THR86
|
3.2
|
123.1
|
1.0
|
|
HD2
|
B:LYS108
|
3.3
|
148.8
|
1.0
|
|
OD2
|
B:ASP58
|
3.4
|
121.8
|
1.0
|
|
CD
|
B:LYS108
|
3.5
|
124.0
|
1.0
|
|
C
|
B:THR86
|
3.5
|
111.8
|
1.0
|
|
HB3
|
B:LYS87
|
3.5
|
152.1
|
1.0
|
|
CE
|
B:LYS108
|
3.5
|
125.5
|
1.0
|
|
HG1
|
B:THR86
|
3.5
|
172.2
|
1.0
|
|
CB
|
B:THR86
|
3.6
|
143.5
|
1.0
|
|
CE
|
B:LYS87
|
3.6
|
108.5
|
1.0
|
|
CG
|
B:LYS87
|
3.7
|
118.4
|
1.0
|
|
O
|
B:HOH707
|
3.7
|
87.7
|
1.0
|
|
CB
|
B:LYS87
|
3.9
|
126.7
|
1.0
|
|
HE2
|
B:LYS87
|
3.9
|
130.3
|
1.0
|
|
H
|
B:ASN60
|
3.9
|
166.1
|
1.0
|
|
CA
|
B:LYS87
|
4.0
|
133.8
|
1.0
|
|
HB
|
B:THR86
|
4.0
|
172.2
|
1.0
|
|
H
|
B:GLU59
|
4.1
|
148.1
|
1.0
|
|
HE3
|
B:LYS108
|
4.1
|
150.6
|
1.0
|
|
HE2
|
B:LYS108
|
4.1
|
150.6
|
1.0
|
|
MG
|
B:MG601
|
4.1
|
114.1
|
1.0
|
|
CD
|
B:LYS87
|
4.2
|
113.6
|
1.0
|
|
CB
|
B:ASP58
|
4.3
|
117.9
|
1.0
|
|
O
|
B:ILE85
|
4.3
|
118.5
|
1.0
|
|
H
|
B:SER88
|
4.3
|
134.9
|
1.0
|
|
HB2
|
B:ASP58
|
4.4
|
141.6
|
1.0
|
|
OD2
|
B:ASP14
|
4.4
|
142.9
|
1.0
|
|
HG3
|
B:LYS87
|
4.4
|
142.1
|
1.0
|
|
N
|
B:THR86
|
4.5
|
102.2
|
1.0
|
|
HA
|
B:ASP58
|
4.5
|
141.9
|
1.0
|
|
HD2
|
B:LYS87
|
4.5
|
136.4
|
1.0
|
|
HA
|
B:LYS87
|
4.6
|
160.7
|
1.0
|
|
NZ
|
B:LYS87
|
4.6
|
109.6
|
1.0
|
|
HZ1
|
B:LYS87
|
4.6
|
131.6
|
1.0
|
|
N
|
B:GLU59
|
4.7
|
123.4
|
1.0
|
|
HZ2
|
B:LYS87
|
4.7
|
131.6
|
1.0
|
|
O
|
B:THR86
|
4.7
|
112.4
|
1.0
|
|
N
|
B:ASN60
|
4.7
|
138.3
|
1.0
|
|
HB3
|
B:ASN60
|
4.7
|
161.6
|
1.0
|
|
HB2
|
B:LYS108
|
4.8
|
143.6
|
1.0
|
|
HB2
|
B:ASN60
|
4.8
|
161.6
|
1.0
|
|
HB2
|
B:LYS87
|
4.8
|
152.1
|
1.0
|
|
C
|
B:ILE85
|
4.9
|
111.7
|
1.0
|
|
O
|
B:ASN60
|
4.9
|
120.1
|
1.0
|
|
CA
|
B:ASP58
|
4.9
|
118.1
|
1.0
|
|
N
|
B:SER88
|
4.9
|
112.3
|
1.0
|
|
CG2
|
B:THR86
|
4.9
|
149.9
|
1.0
|
|
C
|
B:LYS87
|
5.0
|
122.2
|
1.0
|
|
CG
|
B:LYS108
|
5.0
|
121.1
|
1.0
|
|
HG23
|
B:THR86
|
5.0
|
180.0
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 7 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F602
b:53.0
occ:1.00
|
F1
|
C:BEF602
|
0.0
|
53.0
|
1.0
|
|
BE
|
C:BEF602
|
1.5
|
52.0
|
1.0
|
|
MG
|
C:MG601
|
2.1
|
61.9
|
1.0
|
|
OD2
|
C:ASP58
|
2.4
|
84.0
|
1.0
|
|
HB3
|
C:ASN60
|
2.5
|
102.2
|
1.0
|
|
F3
|
C:BEF602
|
2.5
|
57.3
|
1.0
|
|
F2
|
C:BEF602
|
2.6
|
53.2
|
1.0
|
|
O
|
C:HOH775
|
2.6
|
72.1
|
1.0
|
|
O
|
C:HOH722
|
2.6
|
49.0
|
1.0
|
|
OD1
|
C:ASP58
|
2.7
|
85.1
|
1.0
|
|
H
|
C:ASN60
|
2.8
|
94.2
|
1.0
|
|
O
|
C:ASN60
|
2.9
|
91.8
|
1.0
|
|
CG
|
C:ASP58
|
2.9
|
80.3
|
1.0
|
|
HD3
|
C:LYS87
|
3.0
|
100.1
|
1.0
|
|
HD2
|
C:LYS87
|
3.2
|
100.1
|
1.0
|
|
HZ2
|
C:LYS108
|
3.3
|
79.7
|
1.0
|
|
CB
|
C:ASN60
|
3.3
|
85.1
|
1.0
|
|
N
|
C:ASN60
|
3.4
|
78.4
|
1.0
|
|
HZ2
|
C:LYS87
|
3.5
|
99.2
|
1.0
|
|
CD
|
C:LYS87
|
3.6
|
83.4
|
1.0
|
|
C
|
C:ASN60
|
3.6
|
82.0
|
1.0
|
|
CA
|
C:ASN60
|
3.6
|
81.9
|
1.0
|
|
HB2
|
C:ASN60
|
3.7
|
102.2
|
1.0
|
|
OD1
|
C:ASP15
|
3.9
|
101.9
|
1.0
|
|
NZ
|
C:LYS108
|
3.9
|
66.4
|
1.0
|
|
H
|
C:GLU59
|
4.0
|
90.5
|
1.0
|
|
HZ1
|
C:LYS108
|
4.0
|
79.7
|
1.0
|
|
HZ3
|
C:LYS87
|
4.0
|
99.2
|
1.0
|
|
HG1
|
C:THR86
|
4.0
|
79.4
|
1.0
|
|
HZ3
|
C:LYS108
|
4.1
|
79.7
|
1.0
|
|
NZ
|
C:LYS87
|
4.1
|
82.6
|
1.0
|
|
O
|
C:HOH800
|
4.2
|
68.2
|
1.0
|
|
H
|
C:LYS87
|
4.3
|
83.8
|
1.0
|
|
OE2
|
C:GLU16
|
4.4
|
85.4
|
1.0
|
|
CE
|
C:LYS87
|
4.4
|
81.8
|
1.0
|
|
CB
|
C:ASP58
|
4.4
|
79.1
|
1.0
|
|
CG
|
C:ASN60
|
4.5
|
86.1
|
1.0
|
|
N
|
C:GLU59
|
4.6
|
75.3
|
1.0
|
|
HG2
|
C:LYS87
|
4.6
|
94.9
|
1.0
|
|
HA
|
C:ASN60
|
4.6
|
98.4
|
1.0
|
|
OD2
|
C:ASP15
|
4.6
|
102.7
|
1.0
|
|
C
|
C:GLU59
|
4.6
|
67.8
|
1.0
|
|
HD22
|
C:ASN60
|
4.6
|
105.4
|
1.0
|
|
CG
|
C:ASP15
|
4.7
|
99.8
|
1.0
|
|
CG
|
C:LYS87
|
4.7
|
79.0
|
1.0
|
|
HA
|
C:THR86
|
4.7
|
73.2
|
1.0
|
|
HB3
|
C:ASP58
|
4.8
|
95.0
|
1.0
|
|
HE3
|
C:LYS87
|
4.8
|
98.3
|
1.0
|
|
HB2
|
C:ASP58
|
4.8
|
95.0
|
1.0
|
|
OG1
|
C:THR86
|
4.9
|
66.1
|
1.0
|
|
HB3
|
C:GLU59
|
4.9
|
85.5
|
1.0
|
|
N
|
C:MSE61
|
4.9
|
95.0
|
1.0
|
|
HG3
|
C:MSE61
|
4.9
|
107.3
|
1.0
|
|
HZ1
|
C:LYS87
|
4.9
|
99.2
|
1.0
|
|
HG2
|
C:MSE61
|
4.9
|
107.3
|
1.0
|
|
O
|
C:HOH785
|
4.9
|
68.5
|
1.0
|
|
ND2
|
C:ASN60
|
4.9
|
87.7
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 8 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F602
b:53.2
occ:1.00
|
F2
|
C:BEF602
|
0.0
|
53.2
|
1.0
|
|
BE
|
C:BEF602
|
1.6
|
52.0
|
1.0
|
|
HZ2
|
C:LYS108
|
1.8
|
79.7
|
1.0
|
|
H
|
C:LYS87
|
2.0
|
83.8
|
1.0
|
|
OD1
|
C:ASP58
|
2.3
|
85.1
|
1.0
|
|
HD2
|
C:LYS87
|
2.3
|
100.1
|
1.0
|
|
HA
|
C:THR86
|
2.4
|
73.2
|
1.0
|
|
HG1
|
C:THR86
|
2.5
|
79.4
|
1.0
|
|
F3
|
C:BEF602
|
2.5
|
57.3
|
1.0
|
|
F1
|
C:BEF602
|
2.6
|
53.0
|
1.0
|
|
NZ
|
C:LYS108
|
2.7
|
66.4
|
1.0
|
|
N
|
C:LYS87
|
2.8
|
69.8
|
1.0
|
|
HD2
|
C:LYS108
|
3.0
|
76.5
|
1.0
|
|
CD
|
C:LYS87
|
3.1
|
83.4
|
1.0
|
|
HZ1
|
C:LYS108
|
3.1
|
79.7
|
1.0
|
|
HD3
|
C:LYS87
|
3.2
|
100.1
|
1.0
|
|
CA
|
C:THR86
|
3.2
|
60.9
|
1.0
|
|
OG1
|
C:THR86
|
3.2
|
66.1
|
1.0
|
|
HZ3
|
C:LYS108
|
3.2
|
79.7
|
1.0
|
|
HE3
|
C:LYS108
|
3.3
|
77.1
|
1.0
|
|
CG
|
C:ASP58
|
3.4
|
80.3
|
1.0
|
|
CE
|
C:LYS108
|
3.4
|
64.2
|
1.0
|
|
HG2
|
C:LYS87
|
3.4
|
94.9
|
1.0
|
|
C
|
C:THR86
|
3.4
|
57.2
|
1.0
|
|
HB3
|
C:LYS87
|
3.5
|
92.5
|
1.0
|
|
CG
|
C:LYS87
|
3.6
|
79.0
|
1.0
|
|
CB
|
C:THR86
|
3.7
|
59.9
|
1.0
|
|
CD
|
C:LYS108
|
3.7
|
63.7
|
1.0
|
|
H
|
C:GLU59
|
3.7
|
90.5
|
1.0
|
|
O
|
C:HOH722
|
3.8
|
49.0
|
1.0
|
|
CB
|
C:LYS87
|
3.9
|
77.0
|
1.0
|
|
OD2
|
C:ASP58
|
3.9
|
84.0
|
1.0
|
|
H
|
C:ASN60
|
3.9
|
94.2
|
1.0
|
|
HB
|
C:THR86
|
3.9
|
72.0
|
1.0
|
|
CA
|
C:LYS87
|
3.9
|
77.1
|
1.0
|
|
O
|
C:HOH800
|
4.0
|
68.2
|
1.0
|
|
H
|
C:SER88
|
4.2
|
85.9
|
1.0
|
|
O
|
C:ILE85
|
4.2
|
62.1
|
1.0
|
|
HD3
|
C:LYS108
|
4.2
|
76.5
|
1.0
|
|
CE
|
C:LYS87
|
4.3
|
81.8
|
1.0
|
|
HE2
|
C:LYS108
|
4.3
|
77.1
|
1.0
|
|
HZ2
|
C:LYS87
|
4.4
|
99.2
|
1.0
|
|
N
|
C:THR86
|
4.4
|
57.9
|
1.0
|
|
HE3
|
C:LYS87
|
4.4
|
98.3
|
1.0
|
|
MG
|
C:MG601
|
4.5
|
61.9
|
1.0
|
|
HA
|
C:ASP58
|
4.5
|
86.8
|
1.0
|
|
HB3
|
C:ASN60
|
4.5
|
102.2
|
1.0
|
|
N
|
C:GLU59
|
4.5
|
75.3
|
1.0
|
|
HA
|
C:LYS87
|
4.6
|
92.6
|
1.0
|
|
HG3
|
C:LYS87
|
4.6
|
94.9
|
1.0
|
|
HG3
|
C:LYS108
|
4.6
|
80.3
|
1.0
|
|
O
|
C:THR86
|
4.6
|
58.3
|
1.0
|
|
CB
|
C:ASP58
|
4.7
|
79.1
|
1.0
|
|
HB3
|
C:GLU59
|
4.7
|
85.5
|
1.0
|
|
N
|
C:ASN60
|
4.7
|
78.4
|
1.0
|
|
N
|
C:SER88
|
4.7
|
71.5
|
1.0
|
|
C
|
C:ILE85
|
4.8
|
64.8
|
1.0
|
|
O
|
C:HOH775
|
4.8
|
72.1
|
1.0
|
|
NZ
|
C:LYS87
|
4.8
|
82.6
|
1.0
|
|
C
|
C:LYS87
|
4.8
|
74.8
|
1.0
|
|
CG
|
C:LYS108
|
4.8
|
66.8
|
1.0
|
|
HB2
|
C:LYS87
|
4.8
|
92.5
|
1.0
|
|
HB2
|
C:ASP58
|
4.9
|
95.0
|
1.0
|
|
OD2
|
C:ASP14
|
4.9
|
69.2
|
1.0
|
|
HZ3
|
C:LYS87
|
5.0
|
99.2
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 9 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F602
b:57.3
occ:1.00
|
F3
|
C:BEF602
|
0.0
|
57.3
|
1.0
|
|
H
|
C:ASN60
|
1.5
|
94.2
|
1.0
|
|
BE
|
C:BEF602
|
1.5
|
52.0
|
1.0
|
|
HG1
|
C:THR86
|
2.0
|
79.4
|
1.0
|
|
H
|
C:GLU59
|
2.1
|
90.5
|
1.0
|
|
N
|
C:ASN60
|
2.4
|
78.4
|
1.0
|
|
HB3
|
C:GLU59
|
2.5
|
85.5
|
1.0
|
|
F2
|
C:BEF602
|
2.5
|
53.2
|
1.0
|
|
F1
|
C:BEF602
|
2.5
|
53.0
|
1.0
|
|
OD1
|
C:ASP58
|
2.5
|
85.1
|
1.0
|
|
OG1
|
C:THR86
|
2.8
|
66.1
|
1.0
|
|
N
|
C:GLU59
|
2.8
|
75.3
|
1.0
|
|
O
|
C:HOH800
|
3.0
|
68.2
|
1.0
|
|
CB
|
C:GLU59
|
3.1
|
71.2
|
1.0
|
|
CA
|
C:GLU59
|
3.1
|
70.2
|
1.0
|
|
CG
|
C:ASP58
|
3.2
|
80.3
|
1.0
|
|
C
|
C:GLU59
|
3.2
|
67.8
|
1.0
|
|
HB3
|
C:ASN60
|
3.2
|
102.2
|
1.0
|
|
HB2
|
C:ASN60
|
3.3
|
102.2
|
1.0
|
|
OD2
|
C:ASP58
|
3.4
|
84.0
|
1.0
|
|
CA
|
C:ASN60
|
3.4
|
81.9
|
1.0
|
|
HB
|
C:THR86
|
3.5
|
72.0
|
1.0
|
|
CB
|
C:ASN60
|
3.5
|
85.1
|
1.0
|
|
HB2
|
C:GLU59
|
3.5
|
85.5
|
1.0
|
|
CB
|
C:THR86
|
3.6
|
59.9
|
1.0
|
|
HA
|
C:THR86
|
3.6
|
73.2
|
1.0
|
|
H
|
C:LYS87
|
3.7
|
83.8
|
1.0
|
|
C
|
C:ASP58
|
4.0
|
67.7
|
1.0
|
|
HD3
|
C:LYS87
|
4.0
|
100.1
|
1.0
|
|
HZ2
|
C:LYS108
|
4.1
|
79.7
|
1.0
|
|
OE1
|
C:GLU59
|
4.1
|
78.6
|
1.0
|
|
HA
|
C:GLU59
|
4.1
|
84.3
|
1.0
|
|
CA
|
C:THR86
|
4.1
|
60.9
|
1.0
|
|
HD2
|
C:LYS87
|
4.1
|
100.1
|
1.0
|
|
MG
|
C:MG601
|
4.2
|
61.9
|
1.0
|
|
HA
|
C:ASP58
|
4.2
|
86.8
|
1.0
|
|
HA
|
C:ASN60
|
4.2
|
98.4
|
1.0
|
|
C
|
C:ASN60
|
4.2
|
82.0
|
1.0
|
|
O
|
C:ASN60
|
4.2
|
91.8
|
1.0
|
|
CB
|
C:ASP58
|
4.3
|
79.1
|
1.0
|
|
HG2
|
C:LYS87
|
4.3
|
94.9
|
1.0
|
|
O
|
C:GLU59
|
4.4
|
64.7
|
1.0
|
|
CA
|
C:ASP58
|
4.4
|
72.2
|
1.0
|
|
N
|
C:LYS87
|
4.4
|
69.8
|
1.0
|
|
CG
|
C:GLU59
|
4.4
|
75.7
|
1.0
|
|
CD
|
C:LYS87
|
4.5
|
83.4
|
1.0
|
|
H
|
C:SER88
|
4.5
|
85.9
|
1.0
|
|
HB2
|
C:SER88
|
4.7
|
73.7
|
1.0
|
|
CD
|
C:GLU59
|
4.7
|
78.7
|
1.0
|
|
HB3
|
C:ASP58
|
4.8
|
95.0
|
1.0
|
|
C
|
C:THR86
|
4.8
|
57.2
|
1.0
|
|
O
|
C:HOH722
|
4.8
|
49.0
|
1.0
|
|
NZ
|
C:LYS108
|
4.8
|
66.4
|
1.0
|
|
HZ1
|
C:LYS108
|
4.9
|
79.7
|
1.0
|
|
O
|
C:HOH775
|
4.9
|
72.1
|
1.0
|
|
HG3
|
C:GLU59
|
4.9
|
90.9
|
1.0
|
|
CG
|
C:LYS87
|
4.9
|
79.0
|
1.0
|
|
CG
|
C:ASN60
|
5.0
|
86.1
|
1.0
|
|
CG2
|
C:THR86
|
5.0
|
61.9
|
1.0
|
|
O
|
C:ASP58
|
5.0
|
57.8
|
1.0
|
|
HB2
|
C:ASP58
|
5.0
|
95.0
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 7pvk
Go back to
Fluorine Binding Sites List in 7pvk
Fluorine binding site 10 out
of 12 in the X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg.
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of X-Ray Structure of Dimeric Porx (T272A Mutant), in Complex with Pgpg. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F602
b:77.7
occ:1.00
|
F1
|
D:BEF602
|
0.0
|
77.7
|
1.0
|
|
BE
|
D:BEF602
|
1.5
|
74.2
|
1.0
|
|
MG
|
D:MG601
|
1.8
|
81.5
|
1.0
|
|
O
|
D:HOH719
|
2.4
|
80.2
|
1.0
|
|
F3
|
D:BEF602
|
2.5
|
73.0
|
1.0
|
|
HB3
|
D:ASN60
|
2.6
|
152.9
|
1.0
|
|
OD2
|
D:ASP58
|
2.6
|
107.7
|
1.0
|
|
F2
|
D:BEF602
|
2.6
|
79.3
|
1.0
|
|
O
|
D:HOH739
|
2.8
|
73.0
|
1.0
|
|
OD1
|
D:ASP58
|
2.8
|
104.3
|
1.0
|
|
O
|
D:ASN60
|
2.8
|
113.4
|
1.0
|
|
H
|
D:ASN60
|
2.9
|
125.9
|
1.0
|
|
HZ2
|
D:LYS87
|
2.9
|
148.9
|
1.0
|
|
CG
|
D:ASP58
|
3.0
|
102.8
|
1.0
|
|
CB
|
D:ASN60
|
3.4
|
127.4
|
1.0
|
|
N
|
D:ASN60
|
3.5
|
104.9
|
1.0
|
|
C
|
D:ASN60
|
3.6
|
104.6
|
1.0
|
|
HG1
|
D:THR86
|
3.6
|
129.9
|
1.0
|
|
CA
|
D:ASN60
|
3.7
|
110.6
|
1.0
|
|
NZ
|
D:LYS87
|
3.8
|
124.0
|
1.0
|
|
HG2
|
D:LYS87
|
3.8
|
142.6
|
1.0
|
|
OD1
|
D:ASP15
|
3.8
|
110.8
|
1.0
|
|
HB2
|
D:ASN60
|
3.9
|
152.9
|
1.0
|
|
HD22
|
D:ASN60
|
4.0
|
218.8
|
1.0
|
|
HZ2
|
D:LYS108
|
4.0
|
113.9
|
1.0
|
|
HZ1
|
D:LYS87
|
4.0
|
148.9
|
1.0
|
|
H
|
D:GLU59
|
4.2
|
122.9
|
1.0
|
|
HZ3
|
D:LYS87
|
4.2
|
148.9
|
1.0
|
|
CG
|
D:ASN60
|
4.4
|
154.9
|
1.0
|
|
OG1
|
D:THR86
|
4.4
|
108.2
|
1.0
|
|
HE3
|
D:LYS87
|
4.5
|
145.5
|
1.0
|
|
H
|
D:LYS87
|
4.5
|
133.2
|
1.0
|
|
HD2
|
D:LYS87
|
4.5
|
146.4
|
1.0
|
|
ND2
|
D:ASN60
|
4.5
|
182.3
|
1.0
|
|
CB
|
D:ASP58
|
4.5
|
99.7
|
1.0
|
|
OE1
|
D:GLU16
|
4.6
|
114.2
|
1.0
|
|
CE
|
D:LYS87
|
4.6
|
121.2
|
1.0
|
|
N
|
D:GLU59
|
4.6
|
102.4
|
1.0
|
|
CG
|
D:LYS87
|
4.7
|
118.8
|
1.0
|
|
HA
|
D:ASN60
|
4.7
|
132.8
|
1.0
|
|
HG3
|
D:MSE61
|
4.7
|
141.1
|
1.0
|
|
HG3
|
D:GLU16
|
4.7
|
143.4
|
1.0
|
|
C
|
D:GLU59
|
4.7
|
106.0
|
1.0
|
|
CG
|
D:ASP15
|
4.7
|
110.9
|
1.0
|
|
OD2
|
D:ASP15
|
4.8
|
116.8
|
1.0
|
|
HB3
|
D:ASP58
|
4.8
|
119.8
|
1.0
|
|
CD
|
D:LYS87
|
4.8
|
122.0
|
1.0
|
|
HA
|
D:THR86
|
4.8
|
105.4
|
1.0
|
|
NZ
|
D:LYS108
|
4.8
|
94.8
|
1.0
|
|
HB3
|
D:GLU59
|
4.9
|
116.8
|
1.0
|
|
N
|
D:MSE61
|
4.9
|
127.8
|
1.0
|
|
HZ1
|
D:LYS108
|
4.9
|
113.9
|
1.0
|
|
OD1
|
D:ASP14
|
4.9
|
86.0
|
1.0
|
|
HB2
|
D:ASP58
|
5.0
|
119.8
|
1.0
|
|
Reference:
C.Schmitz,
M.Madej,
Z.Nowakowska,
A.Cuppari,
A.Jacula,
M.Ksiazek,
K.Mikruta,
J.Wisniewski,
N.Pudelko-Malik,
A.Saran,
N.Zeytuni,
P.Mlynarz,
R.J.Lamont,
I.Uson,
V.Siksnys,
J.Potempa,
M.Sola.
Response Regulator Porx Coordinates Oligonucleotide Signalling and Gene Expression to Control the Secretion of Virulence Factors. Nucleic Acids Res. V. 50 12558 2022.
ISSN: ESSN 1362-4962
PubMed: 36464236
DOI: 10.1093/NAR/GKAC1103
Page generated: Tue Jul 15 22:53:21 2025
|
