Fluorine in PDB 7qsc: Gtpase in Complex with Gdp.MGF3-
Enzymatic activity of Gtpase in Complex with Gdp.MGF3-
All present enzymatic activity of Gtpase in Complex with Gdp.MGF3-:
3.6.5.2;
Protein crystallography data
The structure of Gtpase in Complex with Gdp.MGF3-, PDB code: 7qsc
was solved by
P.Baumann,
Y.Jin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
55.64 /
1.91
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.765,
66.489,
76.958,
90,
95.27,
90
|
|
R / Rfree (%)
|
24.4 /
29.5
|
Other elements in 7qsc:
The structure of Gtpase in Complex with Gdp.MGF3- also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Gtpase in Complex with Gdp.MGF3-
(pdb code 7qsc). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Gtpase in Complex with Gdp.MGF3-, PDB code: 7qsc:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 1 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F34
b:34.6
occ:1.00
|
F2
|
B:FY334
|
0.0
|
34.6
|
1.0
|
|
CD1
|
B:FY334
|
1.3
|
30.0
|
1.0
|
|
CE1
|
B:FY334
|
2.3
|
30.2
|
1.0
|
|
CG
|
B:FY334
|
2.4
|
28.9
|
1.0
|
|
F3
|
B:FY334
|
2.7
|
31.4
|
1.0
|
|
CB
|
B:FY334
|
2.9
|
27.2
|
1.0
|
|
CE
|
A:LYS189
|
3.1
|
27.9
|
0.5
|
|
CB
|
A:LYS189
|
3.4
|
28.2
|
0.5
|
|
CB
|
A:LYS189
|
3.5
|
29.0
|
0.5
|
|
CD
|
A:LYS189
|
3.5
|
27.9
|
0.5
|
|
CZ
|
B:FY334
|
3.6
|
28.3
|
1.0
|
|
CD2
|
B:FY334
|
3.6
|
27.5
|
1.0
|
|
ND2
|
A:ASN194
|
3.7
|
21.6
|
1.0
|
|
O
|
B:FY334
|
3.7
|
22.8
|
1.0
|
|
O
|
A:HOH359
|
3.8
|
53.2
|
1.0
|
|
O
|
A:LYS189
|
3.9
|
27.1
|
0.5
|
|
O
|
A:LYS189
|
4.0
|
26.7
|
0.5
|
|
CG
|
A:LYS189
|
4.0
|
28.5
|
0.5
|
|
CA
|
B:FY334
|
4.0
|
27.5
|
1.0
|
|
C
|
B:FY334
|
4.1
|
25.1
|
1.0
|
|
CE2
|
B:FY334
|
4.1
|
27.5
|
1.0
|
|
O
|
A:HOH304
|
4.3
|
30.1
|
1.0
|
|
NZ
|
A:LYS189
|
4.3
|
27.8
|
0.5
|
|
CG
|
A:LYS189
|
4.4
|
29.6
|
0.5
|
|
C
|
A:LYS189
|
4.5
|
27.6
|
0.5
|
|
C
|
A:LYS189
|
4.5
|
27.2
|
0.5
|
|
SD
|
A:MET190
|
4.6
|
23.7
|
1.0
|
|
CA
|
A:LYS189
|
4.6
|
28.3
|
0.5
|
|
CA
|
A:LYS189
|
4.6
|
28.8
|
0.5
|
|
OH
|
B:FY334
|
4.7
|
27.1
|
1.0
|
|
N
|
B:FY334
|
4.8
|
29.8
|
1.0
|
|
O3'
|
B:GDP201
|
4.9
|
26.4
|
1.0
|
|
N
|
B:VAL35
|
5.0
|
22.7
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 2 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F34
b:31.4
occ:1.00
|
F3
|
B:FY334
|
0.0
|
31.4
|
1.0
|
|
CE1
|
B:FY334
|
1.3
|
30.2
|
1.0
|
|
CZ
|
B:FY334
|
2.4
|
28.3
|
1.0
|
|
CD1
|
B:FY334
|
2.4
|
30.0
|
1.0
|
|
F2
|
B:FY334
|
2.7
|
34.6
|
1.0
|
|
OH
|
B:FY334
|
2.7
|
27.1
|
1.0
|
|
CB
|
A:ALA85
|
3.0
|
23.5
|
1.0
|
|
SD
|
A:MET190
|
3.5
|
23.7
|
1.0
|
|
CE2
|
B:FY334
|
3.6
|
27.5
|
1.0
|
|
CG
|
B:FY334
|
3.6
|
28.9
|
1.0
|
|
CA
|
A:GLY82
|
3.8
|
24.9
|
1.0
|
|
O
|
A:HOH359
|
3.8
|
53.2
|
1.0
|
|
CD2
|
B:FY334
|
4.1
|
27.5
|
1.0
|
|
ND2
|
A:ASN194
|
4.4
|
21.6
|
1.0
|
|
CE
|
A:MET190
|
4.4
|
23.6
|
1.0
|
|
CG
|
B:PRO36
|
4.4
|
19.9
|
1.0
|
|
CA
|
A:ALA85
|
4.5
|
23.5
|
1.0
|
|
F5
|
B:FY334
|
4.7
|
26.1
|
1.0
|
|
N
|
A:GLY82
|
4.7
|
25.5
|
1.0
|
|
CD
|
B:PRO36
|
4.7
|
20.4
|
1.0
|
|
C
|
A:GLY82
|
4.7
|
23.9
|
1.0
|
|
CB
|
B:ALA15
|
4.8
|
22.6
|
1.0
|
|
O
|
A:GLY82
|
4.8
|
23.1
|
1.0
|
|
CB
|
B:FY334
|
4.9
|
27.2
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 3 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F34
b:26.1
occ:1.00
|
F5
|
B:FY334
|
0.0
|
26.1
|
1.0
|
|
CE2
|
B:FY334
|
1.4
|
27.5
|
1.0
|
|
CD2
|
B:FY334
|
2.4
|
27.5
|
1.0
|
|
CZ
|
B:FY334
|
2.4
|
28.3
|
1.0
|
|
O2A
|
B:GDP201
|
2.7
|
22.9
|
1.0
|
|
OH
|
B:FY334
|
2.8
|
27.1
|
1.0
|
|
O
|
B:HOH307
|
3.0
|
18.1
|
1.0
|
|
F3
|
B:MGF202
|
3.0
|
15.8
|
1.0
|
|
O3B
|
B:GDP201
|
3.2
|
21.0
|
1.0
|
|
O
|
B:VAL35
|
3.5
|
19.9
|
1.0
|
|
O3A
|
B:GDP201
|
3.5
|
20.5
|
1.0
|
|
MG
|
B:MGF202
|
3.6
|
16.8
|
1.0
|
|
CE1
|
B:FY334
|
3.6
|
30.2
|
1.0
|
|
CG
|
B:FY334
|
3.6
|
28.9
|
1.0
|
|
F1
|
B:MGF202
|
3.6
|
15.9
|
1.0
|
|
CA
|
B:PRO36
|
3.7
|
19.7
|
1.0
|
|
PA
|
B:GDP201
|
3.7
|
20.7
|
1.0
|
|
C
|
B:VAL35
|
3.8
|
21.3
|
1.0
|
|
PB
|
B:GDP201
|
3.8
|
20.6
|
1.0
|
|
N
|
B:PRO36
|
3.8
|
20.2
|
1.0
|
|
O2B
|
B:GDP201
|
4.0
|
18.9
|
1.0
|
|
C5'
|
B:GDP201
|
4.1
|
23.5
|
1.0
|
|
CD1
|
B:FY334
|
4.1
|
30.0
|
1.0
|
|
MG
|
B:MG203
|
4.2
|
17.9
|
1.0
|
|
O5'
|
B:GDP201
|
4.3
|
22.2
|
1.0
|
|
CA
|
B:ALA15
|
4.3
|
22.1
|
1.0
|
|
N
|
B:ALA15
|
4.5
|
21.9
|
1.0
|
|
CB
|
B:PRO36
|
4.6
|
19.6
|
1.0
|
|
N
|
B:VAL35
|
4.6
|
22.7
|
1.0
|
|
O
|
B:HOH341
|
4.6
|
22.0
|
1.0
|
|
CD
|
B:PRO36
|
4.7
|
20.4
|
1.0
|
|
F3
|
B:FY334
|
4.7
|
31.4
|
1.0
|
|
C
|
B:PRO36
|
4.7
|
19.0
|
1.0
|
|
N
|
B:THR37
|
4.7
|
18.4
|
1.0
|
|
CG
|
B:PRO36
|
4.8
|
19.9
|
1.0
|
|
CB
|
B:ALA15
|
4.8
|
22.6
|
1.0
|
|
CA
|
B:VAL35
|
4.8
|
22.0
|
1.0
|
|
CB
|
B:FY334
|
4.9
|
27.2
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 4 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F34
b:35.7
occ:1.00
|
F2
|
D:FY334
|
0.0
|
35.7
|
1.0
|
|
CD1
|
D:FY334
|
1.3
|
31.9
|
1.0
|
|
CE1
|
D:FY334
|
2.3
|
32.5
|
1.0
|
|
CG
|
D:FY334
|
2.4
|
29.9
|
1.0
|
|
F3
|
D:FY334
|
2.7
|
35.2
|
1.0
|
|
CB
|
D:FY334
|
2.9
|
29.0
|
1.0
|
|
CE
|
C:LYS189
|
3.3
|
40.7
|
1.0
|
|
CB
|
C:LYS189
|
3.6
|
33.8
|
1.0
|
|
CZ
|
D:FY334
|
3.6
|
31.5
|
1.0
|
|
CD2
|
D:FY334
|
3.6
|
28.9
|
1.0
|
|
ND2
|
C:ASN194
|
3.6
|
22.3
|
1.0
|
|
O
|
D:FY334
|
3.8
|
27.1
|
1.0
|
|
O
|
C:HOH362
|
4.0
|
47.4
|
1.0
|
|
C
|
D:FY334
|
4.0
|
26.4
|
1.0
|
|
CA
|
D:FY334
|
4.0
|
28.4
|
1.0
|
|
CE2
|
D:FY334
|
4.1
|
29.9
|
1.0
|
|
O
|
C:LYS189
|
4.1
|
29.8
|
1.0
|
|
CD
|
C:LYS189
|
4.1
|
39.3
|
1.0
|
|
NZ
|
C:LYS189
|
4.1
|
42.1
|
1.0
|
|
O
|
C:HOH308
|
4.2
|
28.5
|
1.0
|
|
O
|
D:HOH305
|
4.4
|
36.5
|
1.0
|
|
CG
|
C:LYS189
|
4.4
|
36.2
|
1.0
|
|
C
|
C:LYS189
|
4.6
|
29.1
|
1.0
|
|
SD
|
C:MET190
|
4.7
|
23.7
|
1.0
|
|
OH
|
D:FY334
|
4.7
|
28.4
|
1.0
|
|
CA
|
C:LYS189
|
4.7
|
31.9
|
1.0
|
|
N
|
D:VAL35
|
4.8
|
24.3
|
1.0
|
|
N
|
D:FY334
|
4.9
|
30.1
|
1.0
|
|
CG
|
C:ASN194
|
4.9
|
23.1
|
1.0
|
|
O3'
|
D:GDP201
|
4.9
|
26.8
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 5 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F34
b:35.2
occ:1.00
|
F3
|
D:FY334
|
0.0
|
35.2
|
1.0
|
|
CE1
|
D:FY334
|
1.3
|
32.5
|
1.0
|
|
CZ
|
D:FY334
|
2.4
|
31.5
|
1.0
|
|
CD1
|
D:FY334
|
2.4
|
31.9
|
1.0
|
|
F2
|
D:FY334
|
2.7
|
35.7
|
1.0
|
|
OH
|
D:FY334
|
2.7
|
28.4
|
1.0
|
|
CB
|
C:ALA85
|
3.0
|
22.5
|
1.0
|
|
SD
|
C:MET190
|
3.5
|
23.7
|
1.0
|
|
CE2
|
D:FY334
|
3.6
|
29.9
|
1.0
|
|
CG
|
D:FY334
|
3.6
|
29.9
|
1.0
|
|
CA
|
C:GLY82
|
4.0
|
23.9
|
1.0
|
|
O
|
C:HOH362
|
4.0
|
47.4
|
1.0
|
|
CD2
|
D:FY334
|
4.1
|
28.9
|
1.0
|
|
CG
|
D:PRO36
|
4.4
|
20.3
|
1.0
|
|
ND2
|
C:ASN194
|
4.4
|
22.3
|
1.0
|
|
CA
|
C:ALA85
|
4.5
|
22.1
|
1.0
|
|
CE
|
C:MET190
|
4.5
|
23.4
|
1.0
|
|
CD
|
D:PRO36
|
4.5
|
20.2
|
1.0
|
|
F5
|
D:FY334
|
4.7
|
29.3
|
1.0
|
|
C
|
C:GLY82
|
4.9
|
23.4
|
1.0
|
|
O
|
C:GLY82
|
4.9
|
23.1
|
1.0
|
|
CB
|
D:ALA15
|
4.9
|
23.7
|
1.0
|
|
CB
|
D:FY334
|
4.9
|
29.0
|
1.0
|
|
N
|
C:GLY82
|
5.0
|
25.0
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 6 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F34
b:29.3
occ:1.00
|
F5
|
D:FY334
|
0.0
|
29.3
|
1.0
|
|
CE2
|
D:FY334
|
1.4
|
29.9
|
1.0
|
|
CZ
|
D:FY334
|
2.4
|
31.5
|
1.0
|
|
CD2
|
D:FY334
|
2.4
|
28.9
|
1.0
|
|
OH
|
D:FY334
|
2.7
|
28.4
|
1.0
|
|
O2A
|
D:GDP201
|
2.8
|
25.6
|
1.0
|
|
F3
|
D:MGF202
|
3.0
|
15.9
|
1.0
|
|
O
|
D:HOH315
|
3.1
|
15.5
|
1.0
|
|
O3B
|
D:GDP201
|
3.2
|
22.1
|
1.0
|
|
O3A
|
D:GDP201
|
3.3
|
23.8
|
1.0
|
|
F1
|
D:MGF202
|
3.5
|
17.9
|
1.0
|
|
MG
|
D:MGF202
|
3.5
|
18.0
|
1.0
|
|
CE1
|
D:FY334
|
3.6
|
32.5
|
1.0
|
|
PA
|
D:GDP201
|
3.6
|
23.7
|
1.0
|
|
CG
|
D:FY334
|
3.6
|
29.9
|
1.0
|
|
O
|
D:VAL35
|
3.6
|
24.6
|
1.0
|
|
PB
|
D:GDP201
|
3.7
|
22.9
|
1.0
|
|
CA
|
D:PRO36
|
3.8
|
19.7
|
1.0
|
|
O1B
|
D:GDP201
|
3.9
|
20.3
|
1.0
|
|
C
|
D:VAL35
|
3.9
|
23.2
|
1.0
|
|
N
|
D:PRO36
|
3.9
|
20.8
|
1.0
|
|
MG
|
D:MG203
|
4.1
|
18.9
|
1.0
|
|
CD1
|
D:FY334
|
4.1
|
31.9
|
1.0
|
|
C5'
|
D:GDP201
|
4.2
|
24.7
|
1.0
|
|
O5'
|
D:GDP201
|
4.3
|
23.4
|
1.0
|
|
CA
|
D:ALA15
|
4.3
|
23.0
|
1.0
|
|
N
|
D:ALA15
|
4.5
|
23.2
|
1.0
|
|
N
|
D:VAL35
|
4.6
|
24.3
|
1.0
|
|
CB
|
D:PRO36
|
4.6
|
19.5
|
1.0
|
|
F3
|
D:FY334
|
4.7
|
35.2
|
1.0
|
|
N
|
D:THR37
|
4.7
|
18.2
|
1.0
|
|
CD
|
D:PRO36
|
4.8
|
20.2
|
1.0
|
|
C
|
D:PRO36
|
4.8
|
18.7
|
1.0
|
|
CB
|
D:ALA15
|
4.8
|
23.7
|
1.0
|
|
O
|
D:HOH348
|
4.9
|
26.9
|
1.0
|
|
CG
|
D:PRO36
|
4.9
|
20.3
|
1.0
|
|
CA
|
D:VAL35
|
4.9
|
23.8
|
1.0
|
|
CB
|
D:FY334
|
4.9
|
29.0
|
1.0
|
|
O1A
|
D:GDP201
|
4.9
|
23.9
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 7 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F202
b:15.9
occ:1.00
|
F1
|
B:MGF202
|
0.0
|
15.9
|
1.0
|
|
MG
|
B:MGF202
|
1.8
|
16.8
|
1.0
|
|
MG
|
B:MG203
|
1.9
|
17.9
|
1.0
|
|
O
|
B:HOH333
|
2.6
|
18.2
|
1.0
|
|
N
|
B:THR37
|
2.8
|
18.4
|
1.0
|
|
O
|
B:HOH310
|
2.8
|
12.6
|
1.0
|
|
OG1
|
B:THR37
|
2.9
|
18.1
|
1.0
|
|
O3B
|
B:GDP201
|
2.9
|
21.0
|
1.0
|
|
O
|
B:HOH307
|
3.0
|
18.1
|
1.0
|
|
O2B
|
B:GDP201
|
3.1
|
18.9
|
1.0
|
|
CB
|
B:THR37
|
3.1
|
18.4
|
1.0
|
|
F2
|
B:MGF202
|
3.1
|
14.4
|
1.0
|
|
F3
|
B:MGF202
|
3.3
|
15.8
|
1.0
|
|
CA
|
B:THR37
|
3.5
|
18.4
|
1.0
|
|
PB
|
B:GDP201
|
3.5
|
20.6
|
1.0
|
|
F5
|
B:FY334
|
3.6
|
26.1
|
1.0
|
|
C
|
B:PRO36
|
3.7
|
19.0
|
1.0
|
|
CA
|
B:PRO36
|
3.8
|
19.7
|
1.0
|
|
OG1
|
B:THR19
|
4.0
|
23.1
|
1.0
|
|
O
|
B:THR37
|
4.1
|
18.6
|
1.0
|
|
C
|
B:THR37
|
4.3
|
19.1
|
1.0
|
|
O
|
B:THR60
|
4.3
|
17.6
|
1.0
|
|
O
|
B:VAL35
|
4.4
|
19.9
|
1.0
|
|
CG2
|
B:THR37
|
4.5
|
18.6
|
1.0
|
|
O2A
|
B:GDP201
|
4.6
|
22.9
|
1.0
|
|
O1B
|
B:GDP201
|
4.6
|
23.4
|
1.0
|
|
CB
|
B:PRO36
|
4.7
|
19.6
|
1.0
|
|
O3A
|
B:GDP201
|
4.7
|
20.5
|
1.0
|
|
CE
|
B:LYS18
|
4.8
|
22.5
|
1.0
|
|
NZ
|
B:LYS18
|
4.9
|
22.8
|
1.0
|
|
O
|
B:PRO36
|
4.9
|
18.4
|
1.0
|
|
N
|
B:PRO36
|
4.9
|
20.2
|
1.0
|
|
CE2
|
B:FY334
|
4.9
|
27.5
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 8 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F202
b:14.4
occ:1.00
|
F2
|
B:MGF202
|
0.0
|
14.4
|
1.0
|
|
MG
|
B:MGF202
|
1.9
|
16.8
|
1.0
|
|
O
|
B:HOH333
|
2.6
|
18.2
|
1.0
|
|
O3B
|
B:GDP201
|
2.7
|
21.0
|
1.0
|
|
NZ
|
B:LYS18
|
2.7
|
22.8
|
1.0
|
|
N
|
B:GLY62
|
2.8
|
20.1
|
1.0
|
|
F1
|
B:MGF202
|
3.1
|
15.9
|
1.0
|
|
F3
|
B:MGF202
|
3.2
|
15.8
|
1.0
|
|
CE
|
B:LYS18
|
3.2
|
22.5
|
1.0
|
|
CA
|
B:GLY62
|
3.3
|
21.6
|
1.0
|
|
CA
|
B:GLY14
|
3.4
|
23.0
|
1.0
|
|
PB
|
B:GDP201
|
3.8
|
20.6
|
1.0
|
|
OE1
|
B:GLN63
|
3.8
|
19.9
|
1.0
|
|
N
|
B:ALA15
|
3.8
|
21.9
|
1.0
|
|
C
|
B:ALA61
|
3.8
|
19.9
|
1.0
|
|
O1B
|
B:GDP201
|
4.0
|
23.4
|
1.0
|
|
N
|
B:GLY14
|
4.1
|
21.9
|
1.0
|
|
O
|
B:HOH310
|
4.1
|
12.6
|
1.0
|
|
CA
|
B:ALA61
|
4.1
|
19.2
|
1.0
|
|
O
|
B:THR60
|
4.1
|
17.6
|
1.0
|
|
C
|
B:GLY14
|
4.1
|
22.6
|
1.0
|
|
O
|
B:ASP13
|
4.1
|
20.7
|
1.0
|
|
NE2
|
B:GLN63
|
4.3
|
21.8
|
1.0
|
|
C
|
B:GLY62
|
4.3
|
22.9
|
1.0
|
|
CD
|
B:GLN63
|
4.3
|
20.8
|
1.0
|
|
N
|
B:GLN63
|
4.4
|
21.9
|
1.0
|
|
C
|
B:ASP13
|
4.4
|
21.3
|
1.0
|
|
O2B
|
B:GDP201
|
4.4
|
18.9
|
1.0
|
|
O
|
B:GLY12
|
4.5
|
18.5
|
1.0
|
|
MG
|
B:MG203
|
4.5
|
17.9
|
1.0
|
|
CD
|
B:LYS18
|
4.7
|
22.3
|
1.0
|
|
C
|
B:THR60
|
5.0
|
17.4
|
1.0
|
|
O
|
B:ALA61
|
5.0
|
19.0
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 9 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F202
b:15.8
occ:1.00
|
F3
|
B:MGF202
|
0.0
|
15.8
|
1.0
|
|
MG
|
B:MGF202
|
1.8
|
16.8
|
1.0
|
|
OH
|
B:FY334
|
2.5
|
27.1
|
1.0
|
|
O3B
|
B:GDP201
|
2.9
|
21.0
|
1.0
|
|
NE2
|
B:GLN63
|
2.9
|
21.8
|
1.0
|
|
O
|
B:HOH333
|
2.9
|
18.2
|
1.0
|
|
F5
|
B:FY334
|
3.0
|
26.1
|
1.0
|
|
F2
|
B:MGF202
|
3.2
|
14.4
|
1.0
|
|
F1
|
B:MGF202
|
3.3
|
15.9
|
1.0
|
|
N
|
B:ALA15
|
3.4
|
21.9
|
1.0
|
|
CZ
|
B:FY334
|
3.5
|
28.3
|
1.0
|
|
CB
|
B:PRO36
|
3.5
|
19.6
|
1.0
|
|
CA
|
B:PRO36
|
3.6
|
19.7
|
1.0
|
|
CE2
|
B:FY334
|
3.7
|
27.5
|
1.0
|
|
CD
|
B:GLN63
|
3.8
|
20.8
|
1.0
|
|
OE1
|
B:GLN63
|
3.8
|
19.9
|
1.0
|
|
CA
|
B:GLY14
|
3.9
|
23.0
|
1.0
|
|
C
|
B:GLY14
|
4.1
|
22.6
|
1.0
|
|
CA
|
B:ALA15
|
4.2
|
22.1
|
1.0
|
|
CG
|
B:PRO36
|
4.2
|
19.9
|
1.0
|
|
PB
|
B:GDP201
|
4.3
|
20.6
|
1.0
|
|
N
|
B:THR37
|
4.5
|
18.4
|
1.0
|
|
O
|
A:ALA85
|
4.6
|
23.3
|
1.0
|
|
N
|
B:PRO36
|
4.6
|
20.2
|
1.0
|
|
C
|
B:PRO36
|
4.6
|
19.0
|
1.0
|
|
CB
|
B:ALA15
|
4.6
|
22.6
|
1.0
|
|
CB
|
A:ALA85
|
4.7
|
23.5
|
1.0
|
|
CE1
|
B:FY334
|
4.7
|
30.2
|
1.0
|
|
O3A
|
B:GDP201
|
4.9
|
20.5
|
1.0
|
|
MG
|
B:MG203
|
4.9
|
17.9
|
1.0
|
|
O2B
|
B:GDP201
|
5.0
|
18.9
|
1.0
|
|
O
|
B:HOH307
|
5.0
|
18.1
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 7qsc
Go back to
Fluorine Binding Sites List in 7qsc
Fluorine binding site 10 out
of 12 in the Gtpase in Complex with Gdp.MGF3-
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Gtpase in Complex with Gdp.MGF3- within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F202
b:17.9
occ:1.00
|
F1
|
D:MGF202
|
0.0
|
17.9
|
1.0
|
|
MG
|
D:MG203
|
1.8
|
18.9
|
1.0
|
|
MG
|
D:MGF202
|
1.8
|
18.0
|
1.0
|
|
O
|
D:HOH334
|
2.7
|
23.7
|
1.0
|
|
N
|
D:THR37
|
2.8
|
18.2
|
1.0
|
|
O3B
|
D:GDP201
|
2.8
|
22.1
|
1.0
|
|
O
|
D:HOH324
|
2.9
|
14.2
|
1.0
|
|
O
|
D:HOH315
|
2.9
|
15.5
|
1.0
|
|
O1B
|
D:GDP201
|
3.0
|
20.3
|
1.0
|
|
OG1
|
D:THR37
|
3.0
|
16.7
|
1.0
|
|
CB
|
D:THR37
|
3.1
|
17.0
|
1.0
|
|
F3
|
D:MGF202
|
3.2
|
15.9
|
1.0
|
|
F2
|
D:MGF202
|
3.2
|
15.5
|
1.0
|
|
PB
|
D:GDP201
|
3.5
|
22.9
|
1.0
|
|
F5
|
D:FY334
|
3.5
|
29.3
|
1.0
|
|
CA
|
D:THR37
|
3.5
|
17.2
|
1.0
|
|
C
|
D:PRO36
|
3.7
|
18.7
|
1.0
|
|
CA
|
D:PRO36
|
3.8
|
19.7
|
1.0
|
|
OG1
|
D:THR19
|
4.0
|
22.1
|
1.0
|
|
O
|
D:THR37
|
4.1
|
17.8
|
1.0
|
|
C
|
D:THR37
|
4.3
|
17.4
|
1.0
|
|
O
|
D:VAL35
|
4.4
|
24.6
|
1.0
|
|
O
|
D:THR60
|
4.4
|
17.4
|
1.0
|
|
O3A
|
D:GDP201
|
4.5
|
23.8
|
1.0
|
|
CG2
|
D:THR37
|
4.5
|
16.7
|
1.0
|
|
O2A
|
D:GDP201
|
4.6
|
25.6
|
1.0
|
|
CB
|
D:PRO36
|
4.6
|
19.5
|
1.0
|
|
O2B
|
D:GDP201
|
4.7
|
24.7
|
1.0
|
|
CE2
|
D:FY334
|
4.7
|
29.9
|
1.0
|
|
N
|
D:PRO36
|
4.9
|
20.8
|
1.0
|
|
O
|
D:PRO36
|
4.9
|
17.3
|
1.0
|
|
NZ
|
D:LYS18
|
4.9
|
21.9
|
1.0
|
|
CE
|
D:LYS18
|
4.9
|
21.2
|
1.0
|
|
OH
|
D:FY334
|
5.0
|
28.4
|
1.0
|
|
Reference:
P.Baumann,
Y.Jin.
Gtpase in Complex with Gdp.MGF3- To Be Published.
Page generated: Tue Jul 15 23:18:51 2025
|
