Atomistry » Fluorine » PDB 7qmw-7r9f » 7qz2
Atomistry »
  Fluorine »
    PDB 7qmw-7r9f »
      7qz2 »

Fluorine in PDB 7qz2: Crystal Structure of Gacs D1 Domain in Complex with BEF3-

Enzymatic activity of Crystal Structure of Gacs D1 Domain in Complex with BEF3-

All present enzymatic activity of Crystal Structure of Gacs D1 Domain in Complex with BEF3-:
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2 was solved by F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.62 / 1.87
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 69.695, 74.016, 93.342, 90, 90, 90
R / Rfree (%) 16.8 / 21.3

Other elements in 7qz2:

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3- also contains other interesting chemical elements:

Cadmium (Cd) 3 atoms
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Gacs D1 Domain in Complex with BEF3- (pdb code 7qz2). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7qz2

Go back to Fluorine Binding Sites List in 7qz2
Fluorine binding site 1 out of 6 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F804

b:23.4
occ:1.00
 F1 A:BEF804 0.0 23.4 1.0
BE A:BEF804 1.8 16.1 1.0
MG A:MG805 1.8 15.0 1.0
O A:HOH920 2.6 19.9 1.0
O A:GLN717 2.6 16.1 1.0
O A:HOH954 2.6 19.7 1.0
OD2 A:ASP715 2.7 16.5 1.0
OD1 A:ASP715 2.7 19.0 1.0
F3 A:BEF804 3.0 22.4 1.0
F2 A:BEF804 3.1 22.0 1.0
CG A:ASP715 3.1 14.8 1.0
CB A:GLN717 3.3 21.5 1.0
C A:GLN717 3.5 15.2 1.0
N A:GLN717 3.6 20.4 1.0
CA A:GLN717 3.6 19.6 1.0
OD1 A:ASP672 3.8 16.7 1.0
O A:HOH974 4.1 37.0 1.0
NZ A:LYS770 4.2 29.3 1.0
CG A:GLN717 4.3 39.6 1.0
CB A:ASP715 4.6 12.7 1.0
N A:VAL716 4.7 12.8 1.0
C A:VAL716 4.7 18.1 1.0
N A:MET718 4.8 16.4 1.0
CG A:ASP672 4.8 22.1 1.0
OD1 A:ASP671 4.9 19.6 1.0

Fluorine binding site 2 out of 6 in 7qz2

Go back to Fluorine Binding Sites List in 7qz2
Fluorine binding site 2 out of 6 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F804

b:22.0
occ:1.00
 F2 A:BEF804 0.0 22.0 1.0
BE A:BEF804 1.8 16.1 1.0
OG1 A:THR748 2.6 25.7 1.0
N A:GLN717 2.7 20.4 1.0
OD1 A:ASP715 2.7 19.0 1.0
N A:VAL716 2.9 12.8 1.0
F3 A:BEF804 3.0 22.4 1.0
F1 A:BEF804 3.1 23.4 1.0
CB A:VAL716 3.2 22.5 1.0
CB A:THR748 3.3 36.4 1.0
CA A:VAL716 3.3 19.8 1.0
C A:VAL716 3.4 18.1 1.0
CG A:ASP715 3.7 14.8 1.0
CB A:GLN717 3.7 21.5 1.0
CA A:THR748 3.7 29.8 1.0
CG A:GLN717 3.7 39.6 1.0
CA A:GLN717 3.7 19.6 1.0
C A:ASP715 4.0 17.2 1.0
CG2 A:VAL716 4.1 25.8 1.0
ND1 A:HIS750 4.2 39.4 0.5
OD2 A:ASP715 4.2 16.5 1.0
CG1 A:VAL716 4.2 32.3 1.0
N A:ALA749 4.3 27.1 1.0
CA A:ASP715 4.4 15.8 1.0
O A:GLN717 4.5 16.1 1.0
C A:THR748 4.6 21.5 1.0
C A:GLN717 4.6 15.2 1.0
MG A:MG805 4.6 15.0 1.0
O A:LEU747 4.6 24.4 1.0
CG2 A:THR748 4.6 28.1 1.0
O A:VAL716 4.6 17.6 1.0
CB A:ASP715 4.7 12.7 1.0
N A:THR748 4.9 24.3 1.0
N A:HIS750 4.9 58.5 1.0

Fluorine binding site 3 out of 6 in 7qz2

Go back to Fluorine Binding Sites List in 7qz2
Fluorine binding site 3 out of 6 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F804

b:22.4
occ:1.00
 F3 A:BEF804 0.0 22.4 1.0
BE A:BEF804 1.8 16.1 1.0
NZ A:LYS770 2.5 29.3 1.0
OD1 A:ASP715 2.7 19.0 1.0
F1 A:BEF804 3.0 23.4 1.0
F2 A:BEF804 3.0 22.0 1.0
CE A:LYS770 3.1 22.2 1.0
CD A:LYS770 3.2 20.0 1.0
N A:ALA749 3.2 27.1 1.0
CA A:THR748 3.4 29.8 1.0
O A:HOH920 3.7 19.9 1.0
C A:THR748 3.7 21.5 1.0
CG A:ASP715 3.8 14.8 1.0
OG1 A:THR748 3.9 25.7 1.0
CB A:ALA749 4.1 34.5 1.0
O A:LEU747 4.1 24.4 1.0
CB A:THR748 4.2 36.4 1.0
OD2 A:ASP715 4.3 16.5 1.0
CA A:ALA749 4.3 30.6 1.0
CG A:LYS770 4.4 25.5 1.0
MG A:MG805 4.4 15.0 1.0
O A:HOH974 4.4 37.0 1.0
N A:THR748 4.5 24.3 1.0
OD2 A:ASP671 4.7 22.6 1.0
C A:LEU747 4.7 24.6 1.0
OD1 A:ASN676 4.8 24.7 1.0
O A:THR748 4.9 21.9 1.0
CB A:ASP715 4.9 12.7 1.0

Fluorine binding site 4 out of 6 in 7qz2

Go back to Fluorine Binding Sites List in 7qz2
Fluorine binding site 4 out of 6 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F801

b:26.4
occ:1.00
 F1 B:BEF801 0.0 26.4 1.0
BE B:BEF801 1.8 18.4 1.0
NZ B:LYS770 2.5 22.5 1.0
O B:HOH1002 2.6 44.6 1.0
OD1 B:ASP715 2.9 19.1 1.0
F3 B:BEF801 3.0 21.9 1.0
F2 B:BEF801 3.0 23.4 1.0
N B:ALA749 3.1 26.8 1.0
CE B:LYS770 3.2 30.9 1.0
CD B:LYS770 3.3 36.9 1.0
CA B:THR748 3.5 25.1 1.0
C B:THR748 3.8 34.2 1.0
O B:HOH934 3.8 17.4 1.0
CB B:ALA749 3.9 36.5 1.0
CG B:ASP715 3.9 15.8 1.0
OG1 B:THR748 3.9 34.0 1.0
CA B:ALA749 4.1 31.1 1.0
O B:LEU747 4.2 32.1 1.0
O B:HOH942 4.3 34.5 1.0
CB B:THR748 4.3 39.0 1.0
CD2 B:HIS750 4.3 26.2 1.0
MG B:MG802 4.4 16.7 1.0
OD2 B:ASP715 4.4 18.1 1.0
CG B:LYS770 4.5 24.4 1.0
N B:THR748 4.6 20.9 1.0
NE2 B:HIS750 4.6 28.1 1.0
O B:HOH980 4.6 39.2 1.0
OD1 B:ASN676 4.6 24.9 1.0
C B:LEU747 4.8 26.1 1.0
OD2 B:ASP671 4.9 21.4 1.0
O B:THR748 4.9 25.6 1.0

Fluorine binding site 5 out of 6 in 7qz2

Go back to Fluorine Binding Sites List in 7qz2
Fluorine binding site 5 out of 6 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F801

b:23.4
occ:1.00
 F2 B:BEF801 0.0 23.4 1.0
MG B:MG802 1.7 16.7 1.0
BE B:BEF801 1.8 18.4 1.0
O B:HOH960 2.5 20.7 1.0
O B:GLN717 2.6 16.8 1.0
O B:HOH934 2.7 17.4 1.0
OD2 B:ASP715 2.8 18.1 1.0
OD1 B:ASP715 2.8 19.1 1.0
F1 B:BEF801 3.0 26.4 1.0
F3 B:BEF801 3.0 21.9 1.0
CG B:ASP715 3.1 15.8 1.0
O B:HOH980 3.3 39.2 1.0
CB B:GLN717 3.3 25.6 1.0
O B:HOH1002 3.4 44.6 1.0
C B:GLN717 3.5 12.6 1.0
N B:GLN717 3.6 16.0 1.0
CA B:GLN717 3.6 18.6 1.0
OD1 B:ASP672 3.8 20.4 1.0
NZ B:LYS770 4.3 22.5 1.0
O B:HOH942 4.3 34.5 1.0
CG B:GLN717 4.5 36.4 1.0
NE2 B:HIS750 4.6 28.1 1.0
CB B:ASP715 4.6 18.0 1.0
CD2 B:HIS750 4.7 26.2 1.0
C B:VAL716 4.7 14.5 1.0
CG B:ASP672 4.8 24.4 1.0
N B:VAL716 4.8 12.0 1.0
N B:MET718 4.8 16.7 1.0
OD1 B:ASP671 5.0 21.8 1.0
OD2 B:ASP672 5.0 23.8 1.0
O B:HOH924 5.0 30.5 1.0

Fluorine binding site 6 out of 6 in 7qz2

Go back to Fluorine Binding Sites List in 7qz2
Fluorine binding site 6 out of 6 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F801

b:21.9
occ:1.00
 F3 B:BEF801 0.0 21.9 1.0
BE B:BEF801 1.7 18.4 1.0
OG1 B:THR748 2.6 34.0 1.0
OD1 B:ASP715 2.7 19.1 1.0
N B:GLN717 2.8 16.0 1.0
N B:VAL716 3.0 12.0 1.0
F1 B:BEF801 3.0 26.4 1.0
F2 B:BEF801 3.0 23.4 1.0
CB B:VAL716 3.2 19.8 1.0
CB B:THR748 3.3 39.0 1.0
CA B:VAL716 3.3 13.6 1.0
C B:VAL716 3.5 14.5 1.0
CD2 B:HIS750 3.6 26.2 1.0
CG B:ASP715 3.6 15.8 1.0
CA B:THR748 3.7 25.1 1.0
CB B:GLN717 3.8 25.6 1.0
CA B:GLN717 3.8 18.6 1.0
CG B:GLN717 4.1 36.4 1.0
C B:ASP715 4.1 13.7 1.0
CG2 B:VAL716 4.1 22.6 1.0
OD2 B:ASP715 4.2 18.1 1.0
N B:ALA749 4.2 26.8 1.0
CG1 B:VAL716 4.3 24.8 1.0
NE2 B:HIS750 4.4 28.1 1.0
MG B:MG802 4.5 16.7 1.0
O B:GLN717 4.5 16.8 1.0
CA B:ASP715 4.5 16.5 1.0
C B:THR748 4.5 34.2 1.0
C B:GLN717 4.6 12.6 1.0
O B:LEU747 4.6 32.1 1.0
CG B:HIS750 4.6 31.9 1.0
CG2 B:THR748 4.7 33.2 1.0
CB B:ASP715 4.7 18.0 1.0
O B:HOH1002 4.7 44.6 1.0
O B:VAL716 4.7 20.3 1.0
N B:THR748 4.8 20.9 1.0
N B:HIS750 4.8 34.0 1.0

Reference:

F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent. Crystal Structure of Gacs D1 Domain in Complex with BEF3- To Be Published.
Page generated: Tue Jul 15 23:22:18 2025

Last articles

Mn in 6PRO
Mn in 6PUP
Mn in 6PH9
Mn in 6PPZ
Mn in 6PJ3
Mn in 6PIB
Mn in 6OZP
Mn in 6OZO
Mn in 6PBJ
Mn in 6P5O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy