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Fluorine in PDB 7sls: Hiv Reverse Transcriptase with Compound PYR02

Enzymatic activity of Hiv Reverse Transcriptase with Compound PYR02

All present enzymatic activity of Hiv Reverse Transcriptase with Compound PYR02:
2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13;

Protein crystallography data

The structure of Hiv Reverse Transcriptase with Compound PYR02, PDB code: 7sls was solved by D.J.Klein, M.Zebisch, M.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.58 / 2.08
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 117.728, 154.253, 155.441, 90, 90, 90
R / Rfree (%) 22.7 / 25.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Hiv Reverse Transcriptase with Compound PYR02 (pdb code 7sls). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 7 binding sites of Fluorine where determined in the Hiv Reverse Transcriptase with Compound PYR02, PDB code: 7sls:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Fluorine binding site 1 out of 7 in 7sls

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Fluorine binding site 1 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:55.2
occ:1.00
 F6 A:9PJ601 0.0 55.2 1.0
C20 A:9PJ601 1.3 54.8 1.0
C19 A:9PJ601 2.3 53.5 1.0
C21 A:9PJ601 2.4 55.8 1.0
O2 A:9PJ601 2.8 57.0 1.0
O A:LEU234 3.3 45.2 1.0
CD2 A:PHE227 3.4 53.3 1.0
CE2 A:PHE227 3.4 53.9 1.0
CB A:PRO225 3.4 63.6 1.0
C A:HIS235 3.4 48.3 1.0
O A:HIS235 3.5 48.6 1.0
N3 A:9PJ601 3.6 55.0 1.0
C2 A:9PJ601 3.6 52.5 1.0
N A:PRO236 3.7 48.5 1.0
C A:LEU234 3.8 45.3 1.0
CA A:HIS235 3.9 46.8 1.0
N A:HIS235 4.0 45.9 1.0
C1 A:9PJ601 4.1 53.4 1.0
CA A:PRO236 4.1 48.6 1.0
CG A:PRO225 4.3 64.4 1.0
CD A:PRO236 4.4 48.0 1.0
CA A:PRO225 4.4 62.6 1.0
CB A:LEU234 4.5 43.7 1.0
CZ A:PHE227 4.6 53.4 1.0
CG A:PHE227 4.6 52.8 1.0
O1 A:9PJ601 4.6 45.7 1.0
CG A:PRO236 4.7 49.6 1.0
CA A:LEU234 4.8 44.5 1.0
C3 A:9PJ601 4.9 50.7 1.0
N A:PHE227 4.9 55.4 1.0
OH A:TYR318 4.9 46.0 1.0

Fluorine binding site 2 out of 7 in 7sls

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Fluorine binding site 2 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:52.2
occ:1.00
 F3 A:9PJ601 0.0 52.2 1.0
C17 A:9PJ601 1.4 51.2 1.0
F2 A:9PJ601 2.2 51.6 1.0
C18 A:9PJ601 2.4 51.7 1.0
C5 A:9PJ601 2.4 49.3 1.0
N1 A:9PJ601 2.7 48.6 1.0
F4 A:9PJ601 2.7 52.4 1.0
O A:HOH840 3.0 46.6 1.0
CE1 A:TYR181 3.1 45.3 1.0
CD1 A:TYR181 3.1 44.3 1.0
CG1 A:VAL179 3.3 51.4 1.0
F5 A:9PJ601 3.5 51.4 1.0
C6 A:9PJ601 3.6 48.1 1.0
C4 A:9PJ601 3.9 48.2 1.0
CD2 A:LEU100 3.9 40.0 1.0
O A:9PJ601 4.1 48.0 1.0
CZ A:TYR181 4.2 46.0 1.0
CG A:TYR181 4.2 43.5 1.0
CB A:VAL179 4.3 51.6 1.0
O A:HOH764 4.7 57.2 1.0
C16 A:9PJ601 4.7 47.1 1.0
N A:9PJ601 4.8 48.6 1.0
OH A:TYR181 4.8 47.5 1.0
C8 A:9PJ601 4.9 47.0 1.0
CB A:TYR181 4.9 42.8 1.0
O A:TYR188 5.0 47.3 1.0
CD2 A:TYR181 5.0 43.8 1.0
CE2 A:TYR181 5.0 44.6 1.0

Fluorine binding site 3 out of 7 in 7sls

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Fluorine binding site 3 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:51.4
occ:1.00
 F5 A:9PJ601 0.0 51.4 1.0
C18 A:9PJ601 1.4 51.7 1.0
F4 A:9PJ601 2.2 52.4 1.0
C17 A:9PJ601 2.4 51.2 1.0
C5 A:9PJ601 2.9 49.3 1.0
F2 A:9PJ601 2.9 51.6 1.0
O A:9PJ601 3.0 48.0 1.0
C A:VAL189 3.2 49.9 1.0
C6 A:9PJ601 3.2 48.1 1.0
C A:TYR188 3.3 46.7 1.0
O A:VAL189 3.3 49.8 1.0
N A:VAL189 3.4 47.6 1.0
N A:GLY190 3.4 50.4 1.0
F3 A:9PJ601 3.5 52.2 1.0
O A:TYR188 3.5 47.3 1.0
CG2 A:VAL106 3.6 51.1 1.0
CG1 A:VAL106 3.6 51.9 1.0
CA A:VAL189 3.7 48.7 1.0
CA A:GLY190 3.8 51.6 1.0
N1 A:9PJ601 3.8 48.6 1.0
CB A:TYR188 3.8 43.9 1.0
CA A:TYR188 4.0 45.0 1.0
CB A:VAL106 4.0 51.6 1.0
C7 A:9PJ601 4.3 47.5 1.0
C16 A:9PJ601 4.4 47.1 1.0
CA A:VAL106 4.4 52.1 1.0
O A:VAL179 4.6 49.2 1.0
C4 A:9PJ601 4.7 48.2 1.0
N A:THR107 4.7 52.4 1.0
O A:THR107 4.8 51.4 1.0
C14 A:9PJ601 4.9 46.9 1.0
N A:9PJ601 5.0 48.6 1.0

Fluorine binding site 4 out of 7 in 7sls

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Fluorine binding site 4 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:52.4
occ:1.00
 F4 A:9PJ601 0.0 52.4 1.0
C18 A:9PJ601 1.4 51.7 1.0
F5 A:9PJ601 2.2 51.4 1.0
C17 A:9PJ601 2.4 51.2 1.0
F3 A:9PJ601 2.7 52.2 1.0
CA A:GLY190 3.0 51.6 1.0
C5 A:9PJ601 3.0 49.3 1.0
N A:GLY190 3.1 50.4 1.0
N1 A:9PJ601 3.2 48.6 1.0
F2 A:9PJ601 3.5 51.6 1.0
CG1 A:VAL179 3.6 51.4 1.0
CB A:VAL179 3.7 51.6 1.0
C A:VAL189 3.7 49.9 1.0
CG2 A:VAL106 3.8 51.1 1.0
CG A:LYS103 3.8 57.9 1.0
C A:GLY190 4.0 52.6 1.0
CD A:LYS103 4.0 60.1 1.0
C6 A:9PJ601 4.0 48.1 1.0
O A:VAL179 4.1 49.2 1.0
O A:VAL189 4.2 49.8 1.0
O A:HOH840 4.3 46.6 1.0
C4 A:9PJ601 4.3 48.2 1.0
O A:GLY190 4.3 52.4 1.0
O A:9PJ601 4.5 48.0 1.0
CA A:VAL189 4.5 48.7 1.0
CB A:LYS103 4.5 56.1 1.0
O A:TYR188 4.6 47.3 1.0
CG2 A:VAL179 4.6 52.0 1.0
C A:VAL179 4.6 49.1 1.0
CA A:VAL179 4.7 51.3 1.0
C A:TYR188 4.8 46.7 1.0
N A:VAL189 4.8 47.6 1.0
CB A:VAL106 4.9 51.6 1.0
N A:SER191 4.9 53.9 1.0

Fluorine binding site 5 out of 7 in 7sls

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Fluorine binding site 5 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:51.6
occ:1.00
 F2 A:9PJ601 0.0 51.6 1.0
C17 A:9PJ601 1.4 51.2 1.0
F3 A:9PJ601 2.2 52.2 1.0
C18 A:9PJ601 2.4 51.7 1.0
C5 A:9PJ601 2.4 49.3 1.0
O A:9PJ601 2.5 48.0 1.0
C6 A:9PJ601 2.8 48.1 1.0
F5 A:9PJ601 2.9 51.4 1.0
C8 A:9PJ601 3.2 47.0 1.0
CD1 A:TYR181 3.2 44.3 1.0
C7 A:9PJ601 3.2 47.5 1.0
CB A:TYR188 3.4 43.9 1.0
F4 A:9PJ601 3.5 52.4 1.0
CG A:TYR181 3.5 43.5 1.0
N1 A:9PJ601 3.6 48.6 1.0
CB A:TYR181 3.7 42.8 1.0
O A:TYR188 3.9 47.3 1.0
CE1 A:TYR181 3.9 45.3 1.0
C A:TYR188 4.2 46.7 1.0
CD2 A:LEU100 4.2 40.0 1.0
C16 A:9PJ601 4.2 47.1 1.0
CA A:TYR188 4.4 45.0 1.0
CD2 A:TYR181 4.4 43.8 1.0
C9 A:9PJ601 4.4 47.2 1.0
CG A:TYR188 4.4 43.0 1.0
C13 A:9PJ601 4.5 46.9 1.0
C4 A:9PJ601 4.6 48.2 1.0
CD2 A:TYR188 4.6 43.1 1.0
F1 A:9PJ601 4.6 47.9 1.0
N A:TYR181 4.7 42.9 1.0
CZ A:TYR181 4.7 46.0 1.0
CG1 A:VAL179 4.7 51.4 1.0
CA A:TYR181 4.8 42.8 1.0
N A:9PJ601 4.9 48.6 1.0
CE2 A:TYR181 4.9 44.6 1.0

Fluorine binding site 6 out of 7 in 7sls

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Fluorine binding site 6 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:47.7
occ:1.00
 F A:9PJ601 0.0 47.7 1.0
C15 A:9PJ601 1.4 47.5 1.0
F1 A:9PJ601 2.1 47.9 1.0
C9 A:9PJ601 2.4 47.2 1.0
C8 A:9PJ601 3.0 47.0 1.0
CD1 A:LEU100 3.4 40.6 1.0
C10 A:9PJ601 3.5 46.6 1.0
CD2 A:LEU100 3.6 40.0 1.0
CB A:PRO95 3.7 42.0 1.0
CZ3 A:TRP229 3.9 41.6 1.0
CG A:LEU100 3.9 40.8 1.0
CH2 A:TRP229 4.1 41.6 1.0
CE3 A:TRP229 4.2 41.5 1.0
C7 A:9PJ601 4.3 47.5 1.0
CZ2 A:TRP229 4.6 42.0 1.0
CD1 A:LEU234 4.6 43.8 1.0
C11 A:9PJ601 4.6 46.6 1.0
CG A:PRO95 4.6 42.2 1.0
CD2 A:TRP229 4.7 41.7 1.0
C A:PRO95 4.7 39.8 1.0
O A:PRO95 4.8 39.7 1.0
CA A:PRO97 4.8 38.3 1.0
N A:PRO97 4.8 37.8 1.0
CE2 A:TYR181 4.9 44.6 1.0
CD2 A:TYR181 4.9 43.8 1.0
CE2 A:TRP229 4.9 42.1 1.0
C A:HIS96 4.9 37.5 1.0
CA A:PRO95 4.9 41.2 1.0
O A:HIS96 4.9 38.1 1.0
C13 A:9PJ601 5.0 46.9 1.0

Fluorine binding site 7 out of 7 in 7sls

Go back to Fluorine Binding Sites List in 7sls
Fluorine binding site 7 out of 7 in the Hiv Reverse Transcriptase with Compound PYR02


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Hiv Reverse Transcriptase with Compound PYR02 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F601

b:47.9
occ:1.00
 F1 A:9PJ601 0.0 47.9 1.0
C15 A:9PJ601 1.3 47.5 1.0
F A:9PJ601 2.1 47.7 1.0
C9 A:9PJ601 2.3 47.2 1.0
C8 A:9PJ601 2.9 47.0 1.0
CB A:PRO95 3.4 42.0 1.0
CD2 A:TYR181 3.4 43.8 1.0
C10 A:9PJ601 3.4 46.6 1.0
CG A:PRO95 3.6 42.2 1.0
CD2 A:TYR188 3.6 43.1 1.0
CE2 A:TYR188 3.9 43.3 1.0
CE2 A:TYR181 4.0 44.6 1.0
CG A:TYR181 4.0 43.5 1.0
CZ2 A:TRP229 4.2 42.0 1.0
C7 A:9PJ601 4.2 47.5 1.0
CH2 A:TRP229 4.2 41.6 1.0
CB A:TYR181 4.3 42.8 1.0
CD2 A:LEU100 4.4 40.0 1.0
F2 A:9PJ601 4.6 51.6 1.0
C11 A:9PJ601 4.6 46.6 1.0
CE2 A:TRP229 4.6 42.1 1.0
CZ3 A:TRP229 4.6 41.6 1.0
CG A:TYR188 4.7 43.0 1.0
CD A:PRO95 4.8 41.1 1.0
CA A:PRO95 4.9 41.2 1.0
CZ A:TYR181 4.9 46.0 1.0
C13 A:9PJ601 4.9 46.9 1.0
CD1 A:TYR181 5.0 44.3 1.0

Reference:

C.J.Balibar, D.J.Klein, B.Zamlynny, T.L.Diamond, Z.Fang, C.A.Cheney, M.Bukhtiyarova, Y.Ou, M.Xu, L.Ba, S.Carroll, A.El Marrouni, J.Fay, A.Forster, S.L.Goh, M.Gu, D.Krosky, P.Sheth, D.Wang, G.Wu, M.Zebisch, P.Zuck, J.Grobler, D.Hazuda, B.J.Howell, A.Converso. Potent Targeted Activator of Cell Kill (Tack) Molecules Eliminate Hiv-1 Infected Cells To Be Published.
Page generated: Wed Jul 16 00:12:35 2025

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