Fluorine in PDB 7t21: E. Coli Dnab Bound to Ssdna and Adp-ALF4

All present enzymatic activity of E. Coli Dnab Bound to Ssdna and Adp-ALF4:
3.6.4.12;

The structure of E. Coli Dnab Bound to Ssdna and Adp-ALF4 also contains other interesting chemical elements:

Aluminium	(Al)	5 atoms
Magnesium	(Mg)	5 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Fluorine atom in the E. Coli Dnab Bound to Ssdna and Adp-ALF4 (pdb code 7t21). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 20 binding sites of Fluorine where determined in the E. Coli Dnab Bound to Ssdna and Adp-ALF4, PDB code: 7t21:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:215.9 occ:1.00 F1 B:ALF1002 0.0 215.9 1.0 AL B:ALF1002 1.8 215.9 1.0 MG B:MG1003 2.0 216.0 1.0 OE2 B:GLU262 2.2 181.3 1.0 F3 B:ALF1002 2.5 215.9 1.0 F4 B:ALF1002 2.6 216.0 1.0 O2B B:ADP1001 2.7 215.9 1.0 OE1 B:GLU262 2.7 181.3 1.0 CD B:GLU262 2.8 181.3 1.0 O1B B:ADP1001 2.9 215.9 1.0 O2A B:ADP1001 3.0 215.9 1.0 PB B:ADP1001 3.3 215.9 1.0 F2 B:ALF1002 3.6 215.9 1.0 CD A:ARG442 3.8 149.4 1.0 PA B:ADP1001 4.0 215.9 1.0 OG1 B:THR238 4.0 153.2 1.0 NE A:ARG442 4.1 149.4 1.0 CG A:ARG442 4.1 149.4 1.0 O3A B:ADP1001 4.1 215.9 1.0 SD B:MET263 4.1 153.8 1.0 CG B:GLU262 4.3 181.3 1.0 CB B:THR238 4.3 153.2 1.0 NH1 B:ARG271 4.4 157.9 1.0 O1A B:ADP1001 4.4 215.9 1.0 NH2 B:ARG271 4.6 157.9 1.0 O3B B:ADP1001 4.6 215.9 1.0 CZ A:ARG442 4.6 149.4 1.0 CB A:ARG442 4.7 149.4 1.0 CZ B:ARG271 4.9 157.9 1.0 CG B:MET263 4.9 153.8 1.0 CG2 B:THR238 4.9 153.2 1.0

Fluorine binding site 2 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:215.9 occ:1.00 F2 B:ALF1002 0.0 215.9 1.0 AL B:ALF1002 1.8 215.9 1.0 F4 B:ALF1002 2.5 216.0 1.0 F3 B:ALF1002 2.5 215.9 1.0 OE1 B:GLU262 2.7 181.3 1.0 O2B B:ADP1001 2.7 215.9 1.0 CB B:PRO233 3.5 151.4 1.0 NE2 B:GLN384 3.6 175.9 1.0 CA B:PRO233 3.6 151.4 1.0 F1 B:ALF1002 3.6 215.9 1.0 PB B:ADP1001 3.9 215.9 1.0 CD B:GLU262 3.9 181.3 1.0 CG B:PRO233 4.0 151.4 1.0 OE1 B:GLN384 4.1 175.9 1.0 NZ A:LYS440 4.1 157.3 1.0 O3B B:ADP1001 4.2 215.9 1.0 CD B:GLN384 4.2 175.9 1.0 MG B:MG1003 4.2 216.0 1.0 O A:GLN410 4.3 166.1 1.0 N B:SER234 4.4 147.7 1.0 OE2 B:GLU262 4.5 181.3 1.0 O1B B:ADP1001 4.5 215.9 1.0 C B:PRO233 4.5 151.4 1.0 N B:PRO233 4.6 151.4 1.0 CE A:LYS440 4.7 157.3 1.0 CE1 B:TYR344 4.9 172.7 1.0 NZ B:LYS237 4.9 159.0 1.0 CD B:PRO233 4.9 151.4 1.0 CG B:GLU262 5.0 181.3 1.0

Fluorine binding site 3 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:215.9 occ:1.00 F3 B:ALF1002 0.0 215.9 1.0 AL B:ALF1002 1.8 215.9 1.0 F1 B:ALF1002 2.5 215.9 1.0 F2 B:ALF1002 2.5 215.9 1.0 OE1 B:GLU262 2.7 181.3 1.0 O2B B:ADP1001 2.7 215.9 1.0 NE A:ARG442 2.8 149.4 1.0 NZ A:LYS440 3.2 157.3 1.0 CE A:LYS440 3.3 157.3 1.0 CD B:GLU262 3.3 181.3 1.0 CD A:ARG442 3.4 149.4 1.0 OE2 B:GLU262 3.5 181.3 1.0 CZ A:ARG442 3.5 149.4 1.0 CG A:ARG442 3.5 149.4 1.0 F4 B:ALF1002 3.6 216.0 1.0 NH2 A:ARG442 3.7 149.4 1.0 O2A B:ADP1001 3.9 215.9 1.0 N B:SER234 4.1 147.7 1.0 PB B:ADP1001 4.1 215.9 1.0 MG B:MG1003 4.2 216.0 1.0 CB B:PRO233 4.3 151.4 1.0 NH1 A:ARG442 4.5 149.4 1.0 CA B:PRO233 4.5 151.4 1.0 CG B:GLU262 4.6 181.3 1.0 O1B B:ADP1001 4.6 215.9 1.0 O A:ALA412 4.7 156.5 1.0 CD A:LYS440 4.8 157.3 1.0 O A:GLN410 4.8 166.1 1.0 C B:PRO233 4.8 151.4 1.0 CB A:ARG442 4.8 149.4 1.0 CA B:SER234 4.9 147.7 1.0 O3A B:ADP1001 4.9 215.9 1.0

Fluorine binding site 4 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:F1002 b:216.0 occ:1.00 F4 B:ALF1002 0.0 216.0 1.0 AL B:ALF1002 1.8 215.9 1.0 MG B:MG1003 2.0 216.0 1.0 F2 B:ALF1002 2.5 215.9 1.0 F1 B:ALF1002 2.6 215.9 1.0 OE1 B:GLU262 2.6 181.3 1.0 O2B B:ADP1001 2.7 215.9 1.0 O1B B:ADP1001 2.8 215.9 1.0 OG1 B:THR238 3.0 153.2 1.0 PB B:ADP1001 3.0 215.9 1.0 CD B:GLU262 3.4 181.3 1.0 O3B B:ADP1001 3.5 215.9 1.0 F3 B:ALF1002 3.6 215.9 1.0 OE2 B:GLU262 3.6 181.3 1.0 CB B:THR238 4.0 153.2 1.0 OD1 B:ASP343 4.1 184.3 1.0 CE B:LYS237 4.2 159.0 1.0 NE2 B:GLN384 4.2 175.9 1.0 OD2 B:ASP343 4.5 184.3 1.0 O3A B:ADP1001 4.5 215.9 1.0 CG B:GLU262 4.7 181.3 1.0 NZ B:LYS237 4.7 159.0 1.0 N B:THR238 4.7 153.2 1.0 CG B:ASP343 4.7 184.3 1.0 CD1 B:TYR344 4.8 172.7 1.0 O2A B:ADP1001 4.9 215.9 1.0 CG2 B:THR238 5.0 153.2 1.0 CE1 B:TYR344 5.0 172.7 1.0 CA B:THR238 5.0 153.2 1.0

Fluorine binding site 5 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:216.0 occ:1.00 F1 C:ALF1002 0.0 216.0 1.0 AL C:ALF1002 1.8 215.9 1.0 MG C:MG1003 2.0 215.9 1.0 F3 C:ALF1002 2.5 216.0 1.0 F4 C:ALF1002 2.6 215.8 1.0 OE1 C:GLU262 2.7 156.5 1.0 O2B C:ADP1001 2.7 215.9 1.0 O3B C:ADP1001 2.9 215.9 1.0 OE2 C:GLU262 3.0 156.5 1.0 O2A C:ADP1001 3.1 216.0 1.0 CD C:GLU262 3.1 156.5 1.0 PB C:ADP1001 3.2 215.9 1.0 O1A C:ADP1001 3.4 215.9 1.0 PA C:ADP1001 3.5 216.0 1.0 F2 C:ALF1002 3.6 215.9 1.0 O3A C:ADP1001 3.8 215.9 1.0 SD C:MET263 4.0 142.1 1.0 OG1 C:THR238 4.0 124.1 1.0 NE B:ARG442 4.3 162.3 1.0 CG C:GLU262 4.4 156.5 1.0 CG C:MET263 4.4 142.1 1.0 CB C:THR238 4.6 124.1 1.0 CZ B:ARG442 4.6 162.3 1.0 O1B C:ADP1001 4.7 215.9 1.0 CD B:ARG442 4.7 162.3 1.0 NH1 C:ARG271 4.8 137.0 1.0 CB C:GLU262 4.9 156.5 1.0 NH2 B:ARG442 4.9 162.3 1.0 CG B:ARG442 4.9 162.3 1.0 NZ B:LYS440 5.0 173.4 1.0

Fluorine binding site 6 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:215.9 occ:1.00 F2 C:ALF1002 0.0 215.9 1.0 AL C:ALF1002 1.8 215.9 1.0 F4 C:ALF1002 2.5 215.8 1.0 F3 C:ALF1002 2.5 216.0 1.0 OE1 C:GLU262 2.7 156.5 1.0 NE2 C:GLN384 2.7 150.8 1.0 O2B C:ADP1001 2.8 215.9 1.0 CD C:GLU262 3.6 156.5 1.0 CD C:GLN384 3.6 150.8 1.0 F1 C:ALF1002 3.6 216.0 1.0 OE1 C:GLN384 3.7 150.8 1.0 OE2 C:GLU262 3.8 156.5 1.0 CG C:PRO233 4.0 118.8 1.0 PB C:ADP1001 4.0 215.9 1.0 CB C:PRO233 4.0 118.8 1.0 CA C:PRO233 4.1 118.8 1.0 MG C:MG1003 4.2 215.9 1.0 NZ C:LYS237 4.3 138.4 1.0 CE1 C:TYR344 4.3 153.5 1.0 CE C:LYS237 4.5 138.4 1.0 O3B C:ADP1001 4.6 215.9 1.0 O1B C:ADP1001 4.6 215.9 1.0 CD1 C:TYR344 4.6 153.5 1.0 N C:PRO233 4.6 118.8 1.0 CG C:GLU262 4.8 156.5 1.0 CD C:PRO233 4.8 118.8 1.0 CG B:GLN410 4.8 197.9 1.0 CA B:GLN410 4.9 197.9 1.0 NZ B:LYS440 4.9 173.4 1.0 CB B:GLN410 4.9 197.9 1.0 CG C:GLN384 5.0 150.8 1.0

Fluorine binding site 7 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:216.0 occ:1.00 F3 C:ALF1002 0.0 216.0 1.0 AL C:ALF1002 1.8 215.9 1.0 OE2 C:GLU262 2.2 156.5 1.0 F1 C:ALF1002 2.5 216.0 1.0 F2 C:ALF1002 2.5 215.9 1.0 OE1 C:GLU262 2.7 156.5 1.0 O2B C:ADP1001 2.7 215.9 1.0 CD C:GLU262 2.8 156.5 1.0 NZ B:LYS440 2.8 173.4 1.0 O1A C:ADP1001 3.6 215.9 1.0 F4 C:ALF1002 3.6 215.8 1.0 CE B:LYS440 3.7 173.4 1.0 O B:GLN410 3.8 197.9 1.0 CB C:PRO233 3.8 118.8 1.0 PB C:ADP1001 4.1 215.9 1.0 MG C:MG1003 4.2 215.9 1.0 CA C:PRO233 4.3 118.8 1.0 NH2 B:ARG442 4.3 162.3 1.0 CG C:GLU262 4.3 156.5 1.0 NE B:ARG442 4.3 162.3 1.0 CA B:GLN410 4.4 197.9 1.0 PA C:ADP1001 4.5 216.0 1.0 CG C:PRO233 4.5 118.8 1.0 C B:GLN410 4.6 197.9 1.0 O3B C:ADP1001 4.6 215.9 1.0 CZ B:ARG442 4.6 162.3 1.0 O3A C:ADP1001 4.6 215.9 1.0 O B:GLU409 4.7 187.4 1.0 N C:SER234 4.8 122.2 1.0 O2A C:ADP1001 4.8 216.0 1.0

Fluorine binding site 8 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ C:F1002 b:215.8 occ:1.00 F4 C:ALF1002 0.0 215.8 1.0 AL C:ALF1002 1.8 215.9 1.0 MG C:MG1003 2.0 215.9 1.0 F2 C:ALF1002 2.5 215.9 1.0 OE1 C:GLU262 2.6 156.5 1.0 F1 C:ALF1002 2.6 216.0 1.0 O2B C:ADP1001 2.7 215.9 1.0 O3B C:ADP1001 2.8 215.9 1.0 OG1 C:THR238 2.9 124.1 1.0 PB C:ADP1001 3.1 215.9 1.0 F3 C:ALF1002 3.6 216.0 1.0 CD C:GLU262 3.8 156.5 1.0 OD1 C:ASP343 3.9 164.6 1.0 O1B C:ADP1001 3.9 215.9 1.0 CE C:LYS237 4.0 138.4 1.0 CB C:THR238 4.1 124.1 1.0 OD2 C:ASP343 4.2 164.6 1.0 NE2 C:GLN384 4.3 150.8 1.0 OE2 C:GLU262 4.4 156.5 1.0 CG C:ASP343 4.4 164.6 1.0 N C:THR238 4.5 124.1 1.0 O3A C:ADP1001 4.6 215.9 1.0 NZ C:LYS237 4.6 138.4 1.0 CD1 C:LEU382 4.7 148.3 1.0 CD1 C:TYR344 4.7 153.5 1.0 CA C:THR238 4.9 124.1 1.0 O2A C:ADP1001 4.9 216.0 1.0 CG C:GLU262 5.0 156.5 1.0 CB C:GLU262 5.0 156.5 1.0 CE1 C:TYR344 5.0 153.5 1.0

Fluorine binding site 9 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ D:F1002 b:215.9 occ:1.00 F1 D:ALF1002 0.0 215.9 1.0 AL D:ALF1002 1.8 215.9 1.0 MG D:MG1003 2.0 215.9 1.0 O1A D:ADP1001 2.2 216.0 1.0 F3 D:ALF1002 2.5 215.9 1.0 F4 D:ALF1002 2.6 215.9 1.0 OE1 D:GLU262 2.7 179.0 1.0 O2B D:ADP1001 2.7 215.9 1.0 O3B D:ADP1001 2.9 215.9 1.0 PB D:ADP1001 3.1 215.9 1.0 PA D:ADP1001 3.2 215.9 1.0 O3A D:ADP1001 3.3 216.0 1.0 CD D:GLU262 3.5 179.0 1.0 F2 D:ALF1002 3.6 215.9 1.0 O2A D:ADP1001 3.9 216.0 1.0 OE2 D:GLU262 3.9 179.0 1.0 NH1 D:ARG271 4.0 162.2 1.0 OG1 D:THR238 4.0 144.0 1.0 CD C:ARG442 4.1 167.7 1.0 SD D:MET263 4.2 169.0 1.0 NE C:ARG442 4.3 167.7 1.0 CG C:ARG442 4.3 167.7 1.0 CB D:THR238 4.3 144.0 1.0 NH2 D:ARG271 4.3 162.2 1.0 O5' D:ADP1001 4.5 215.9 1.0 O1B D:ADP1001 4.6 215.9 1.0 CZ D:ARG271 4.6 162.2 1.0 CG D:GLU262 4.7 179.0 1.0 CZ C:ARG442 4.7 167.7 1.0 CB C:ARG442 4.7 167.7 1.0 N D:SER234 4.9 146.3 1.0 CG D:MET263 5.0 169.0 1.0

Fluorine binding site 10 out of 20 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ D:F1002 b:215.9 occ:1.00 F2 D:ALF1002 0.0 215.9 1.0 AL D:ALF1002 1.8 215.9 1.0 F4 D:ALF1002 2.5 215.9 1.0 F3 D:ALF1002 2.5 215.9 1.0 OE1 D:GLU262 2.7 179.0 1.0 O2B D:ADP1001 2.8 215.9 1.0 OE2 D:GLU262 3.2 179.0 1.0 CD D:GLU262 3.2 179.0 1.0 CB D:PRO233 3.6 144.1 1.0 F1 D:ALF1002 3.6 215.9 1.0 NE2 D:GLN384 3.6 183.8 1.0 CA D:PRO233 3.8 144.1 1.0 NZ C:LYS440 4.1 164.5 1.0 PB D:ADP1001 4.1 215.9 1.0 CG D:PRO233 4.2 144.1 1.0 O C:GLN410 4.2 177.7 1.0 MG D:MG1003 4.2 215.9 1.0 NH2 C:ARG442 4.2 167.7 1.0 N D:SER234 4.4 146.3 1.0 CD D:GLN384 4.5 183.8 1.0 O3B D:ADP1001 4.5 215.9 1.0 OE1 D:GLN384 4.5 183.8 1.0 CZ C:ARG442 4.5 167.7 1.0 CG D:GLU262 4.6 179.0 1.0 NE C:ARG442 4.6 167.7 1.0 CA C:GLN410 4.6 177.7 1.0 C D:PRO233 4.7 144.1 1.0 CE C:LYS440 4.7 164.5 1.0 N D:PRO233 4.8 144.1 1.0 C C:GLN410 4.9 177.7 1.0 O1B D:ADP1001 5.0 215.9 1.0

A.J.Oakley, Z.Q.Xu. Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.