Fluorine in PDB 7t22: E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Enzymatic activity of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
All present enzymatic activity of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4:
2.7.7.101;
3.6.4.12;
Other elements in 7t22:
The structure of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Fluorine atom in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
(pdb code 7t22). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 20 binding sites of Fluorine where determined in the
E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4, PDB code: 7t22:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 1 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:157.7
occ:1.00
|
F1
|
B:ALF1002
|
0.0
|
157.7
|
1.0
|
|
AL
|
B:ALF1002
|
1.8
|
157.7
|
1.0
|
|
MG
|
B:MG1003
|
2.0
|
157.7
|
1.0
|
|
O1A
|
B:ADP1001
|
2.4
|
171.1
|
1.0
|
|
F3
|
B:ALF1002
|
2.5
|
157.7
|
1.0
|
|
F4
|
B:ALF1002
|
2.6
|
157.7
|
1.0
|
|
O2B
|
B:ADP1001
|
2.7
|
171.1
|
1.0
|
|
O3B
|
B:ADP1001
|
2.9
|
171.1
|
1.0
|
|
OE2
|
B:GLU262
|
2.9
|
170.5
|
1.0
|
|
PA
|
B:ADP1001
|
3.1
|
171.1
|
1.0
|
|
O2A
|
B:ADP1001
|
3.1
|
171.1
|
1.0
|
|
PB
|
B:ADP1001
|
3.2
|
171.1
|
1.0
|
|
O3A
|
B:ADP1001
|
3.5
|
171.1
|
1.0
|
|
F2
|
B:ALF1002
|
3.6
|
157.7
|
1.0
|
|
CD
|
B:GLU262
|
3.8
|
170.5
|
1.0
|
|
OG1
|
B:THR238
|
4.0
|
159.2
|
1.0
|
|
OE1
|
B:GLU262
|
4.1
|
170.5
|
1.0
|
|
NE
|
A:ARG442
|
4.1
|
193.6
|
1.0
|
|
CG
|
A:ARG442
|
4.2
|
193.6
|
1.0
|
|
CD
|
A:ARG442
|
4.3
|
193.6
|
1.0
|
|
NH2
|
B:ARG271
|
4.5
|
172.4
|
1.0
|
|
O5'
|
B:ADP1001
|
4.6
|
171.1
|
1.0
|
|
NH1
|
B:ARG271
|
4.6
|
172.4
|
1.0
|
|
O1B
|
B:ADP1001
|
4.6
|
171.1
|
1.0
|
|
CZ
|
A:ARG442
|
4.7
|
193.6
|
1.0
|
|
CB
|
B:THR238
|
4.8
|
159.2
|
1.0
|
|
N
|
B:SER234
|
4.8
|
177.2
|
1.0
|
|
SD
|
B:MET263
|
4.9
|
171.7
|
1.0
|
|
CE
|
A:LYS440
|
4.9
|
202.3
|
1.0
|
|
NZ
|
A:LYS440
|
5.0
|
202.3
|
1.0
|
|
CG
|
B:GLU262
|
5.0
|
170.5
|
1.0
|
|
CB
|
A:ARG442
|
5.0
|
193.6
|
1.0
|
|
Fluorine binding site 2 out
of 20 in 7t22
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Fluorine Binding Sites List in 7t22
Fluorine binding site 2 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:157.7
occ:1.00
|
F2
|
B:ALF1002
|
0.0
|
157.7
|
1.0
|
|
AL
|
B:ALF1002
|
1.8
|
157.7
|
1.0
|
|
F4
|
B:ALF1002
|
2.5
|
157.7
|
1.0
|
|
F3
|
B:ALF1002
|
2.5
|
157.7
|
1.0
|
|
O2B
|
B:ADP1001
|
2.7
|
171.1
|
1.0
|
|
NE2
|
B:GLN384
|
3.1
|
157.4
|
1.0
|
|
OE2
|
B:GLU262
|
3.4
|
170.5
|
1.0
|
|
CA
|
B:PRO233
|
3.5
|
172.8
|
1.0
|
|
F1
|
B:ALF1002
|
3.6
|
157.7
|
1.0
|
|
CB
|
B:PRO233
|
3.6
|
172.8
|
1.0
|
|
CG
|
B:PRO233
|
4.0
|
172.8
|
1.0
|
|
PB
|
B:ADP1001
|
4.1
|
171.1
|
1.0
|
|
CD
|
B:GLN384
|
4.2
|
157.4
|
1.0
|
|
MG
|
B:MG1003
|
4.2
|
157.7
|
1.0
|
|
CG
|
B:GLN384
|
4.2
|
157.4
|
1.0
|
|
NZ
|
B:LYS237
|
4.3
|
167.9
|
1.0
|
|
CE
|
B:LYS237
|
4.3
|
167.9
|
1.0
|
|
N
|
B:PRO233
|
4.3
|
172.8
|
1.0
|
|
CD
|
B:GLU262
|
4.5
|
170.5
|
1.0
|
|
O3B
|
B:ADP1001
|
4.6
|
171.1
|
1.0
|
|
N
|
B:SER234
|
4.6
|
177.2
|
1.0
|
|
C
|
B:PRO233
|
4.6
|
172.8
|
1.0
|
|
NZ
|
A:LYS440
|
4.7
|
202.3
|
1.0
|
|
O1B
|
B:ADP1001
|
4.8
|
171.1
|
1.0
|
|
CD
|
B:PRO233
|
4.8
|
172.8
|
1.0
|
|
O
|
A:GLN410
|
4.8
|
188.4
|
1.0
|
|
OE1
|
B:GLU262
|
5.0
|
170.5
|
1.0
|
|
O
|
B:ARG232
|
5.0
|
170.9
|
1.0
|
|
Fluorine binding site 3 out
of 20 in 7t22
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Fluorine Binding Sites List in 7t22
Fluorine binding site 3 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:157.7
occ:1.00
|
F3
|
B:ALF1002
|
0.0
|
157.7
|
1.0
|
|
AL
|
B:ALF1002
|
1.8
|
157.7
|
1.0
|
|
F1
|
B:ALF1002
|
2.5
|
157.7
|
1.0
|
|
F2
|
B:ALF1002
|
2.5
|
157.7
|
1.0
|
|
O2B
|
B:ADP1001
|
2.7
|
171.1
|
1.0
|
|
NZ
|
A:LYS440
|
2.9
|
202.3
|
1.0
|
|
O1A
|
B:ADP1001
|
3.1
|
171.1
|
1.0
|
|
CE
|
A:LYS440
|
3.2
|
202.3
|
1.0
|
|
CB
|
B:PRO233
|
3.4
|
172.8
|
1.0
|
|
N
|
B:SER234
|
3.6
|
177.2
|
1.0
|
|
F4
|
B:ALF1002
|
3.6
|
157.7
|
1.0
|
|
CA
|
B:PRO233
|
3.7
|
172.8
|
1.0
|
|
OE2
|
B:GLU262
|
3.7
|
170.5
|
1.0
|
|
PB
|
B:ADP1001
|
4.0
|
171.1
|
1.0
|
|
C
|
B:PRO233
|
4.1
|
172.8
|
1.0
|
|
NE
|
A:ARG442
|
4.1
|
193.6
|
1.0
|
|
MG
|
B:MG1003
|
4.2
|
157.7
|
1.0
|
|
PA
|
B:ADP1001
|
4.3
|
171.1
|
1.0
|
|
O3A
|
B:ADP1001
|
4.3
|
171.1
|
1.0
|
|
CD
|
A:LYS440
|
4.4
|
202.3
|
1.0
|
|
NH2
|
A:ARG442
|
4.5
|
193.6
|
1.0
|
|
CG
|
B:PRO233
|
4.5
|
172.8
|
1.0
|
|
CA
|
B:SER234
|
4.6
|
177.2
|
1.0
|
|
O3B
|
B:ADP1001
|
4.6
|
171.1
|
1.0
|
|
CZ
|
A:ARG442
|
4.7
|
193.6
|
1.0
|
|
CG
|
A:ARG442
|
4.7
|
193.6
|
1.0
|
|
OG
|
B:SER234
|
4.9
|
177.2
|
1.0
|
|
CD
|
A:ARG442
|
4.9
|
193.6
|
1.0
|
|
O
|
A:GLN410
|
4.9
|
188.4
|
1.0
|
|
CD
|
B:GLU262
|
5.0
|
170.5
|
1.0
|
|
Fluorine binding site 4 out
of 20 in 7t22
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Fluorine Binding Sites List in 7t22
Fluorine binding site 4 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1002
b:157.7
occ:1.00
|
F4
|
B:ALF1002
|
0.0
|
157.7
|
1.0
|
|
AL
|
B:ALF1002
|
1.8
|
157.7
|
1.0
|
|
MG
|
B:MG1003
|
2.0
|
157.7
|
1.0
|
|
OE2
|
B:GLU262
|
2.4
|
170.5
|
1.0
|
|
F2
|
B:ALF1002
|
2.5
|
157.7
|
1.0
|
|
F1
|
B:ALF1002
|
2.6
|
157.7
|
1.0
|
|
O2B
|
B:ADP1001
|
2.7
|
171.1
|
1.0
|
|
O3B
|
B:ADP1001
|
2.8
|
171.1
|
1.0
|
|
OG1
|
B:THR238
|
2.9
|
159.2
|
1.0
|
|
OE1
|
B:GLU262
|
3.0
|
170.5
|
1.0
|
|
CD
|
B:GLU262
|
3.1
|
170.5
|
1.0
|
|
PB
|
B:ADP1001
|
3.2
|
171.1
|
1.0
|
|
CE
|
B:LYS237
|
3.5
|
167.9
|
1.0
|
|
F3
|
B:ALF1002
|
3.6
|
157.7
|
1.0
|
|
NZ
|
B:LYS237
|
4.1
|
167.9
|
1.0
|
|
O1B
|
B:ADP1001
|
4.2
|
171.1
|
1.0
|
|
CB
|
B:THR238
|
4.2
|
159.2
|
1.0
|
|
N
|
B:THR238
|
4.4
|
159.2
|
1.0
|
|
CB
|
B:LYS237
|
4.5
|
167.9
|
1.0
|
|
O3A
|
B:ADP1001
|
4.5
|
171.1
|
1.0
|
|
CG
|
B:GLU262
|
4.5
|
170.5
|
1.0
|
|
O1A
|
B:ADP1001
|
4.7
|
171.1
|
1.0
|
|
CD
|
B:LYS237
|
4.8
|
167.9
|
1.0
|
|
NE2
|
B:GLN384
|
4.8
|
157.4
|
1.0
|
|
O2A
|
B:ADP1001
|
4.8
|
171.1
|
1.0
|
|
OD1
|
B:ASP343
|
4.9
|
167.6
|
1.0
|
|
PA
|
B:ADP1001
|
4.9
|
171.1
|
1.0
|
|
CA
|
B:THR238
|
4.9
|
159.2
|
1.0
|
|
Fluorine binding site 5 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 5 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:129.2
occ:1.00
|
F1
|
C:ALF1002
|
0.0
|
129.2
|
1.0
|
|
AL
|
C:ALF1002
|
1.8
|
129.2
|
1.0
|
|
MG
|
C:MG1003
|
2.0
|
129.2
|
1.0
|
|
O2A
|
C:ADP1001
|
2.4
|
147.2
|
1.0
|
|
F3
|
C:ALF1002
|
2.5
|
129.2
|
1.0
|
|
F4
|
C:ALF1002
|
2.6
|
129.2
|
1.0
|
|
O2B
|
C:ADP1001
|
2.7
|
147.2
|
1.0
|
|
OE2
|
C:GLU262
|
2.8
|
129.2
|
1.0
|
|
O3B
|
C:ADP1001
|
2.9
|
147.2
|
1.0
|
|
PA
|
C:ADP1001
|
3.1
|
147.2
|
1.0
|
|
O1A
|
C:ADP1001
|
3.2
|
147.2
|
1.0
|
|
PB
|
C:ADP1001
|
3.2
|
147.2
|
1.0
|
|
O3A
|
C:ADP1001
|
3.6
|
147.2
|
1.0
|
|
F2
|
C:ALF1002
|
3.6
|
129.2
|
1.0
|
|
CD
|
C:GLU262
|
3.6
|
129.2
|
1.0
|
|
OE1
|
C:GLU262
|
4.0
|
129.2
|
1.0
|
|
OG1
|
C:THR238
|
4.0
|
140.2
|
1.0
|
|
O5'
|
C:ADP1001
|
4.6
|
147.2
|
1.0
|
|
O1B
|
C:ADP1001
|
4.7
|
147.2
|
1.0
|
|
N
|
C:SER234
|
4.7
|
153.1
|
1.0
|
|
CB
|
C:THR238
|
4.8
|
140.2
|
1.0
|
|
NH1
|
C:ARG271
|
4.8
|
153.1
|
1.0
|
|
CG
|
C:GLU262
|
4.8
|
129.2
|
1.0
|
|
NH2
|
C:ARG271
|
4.8
|
153.1
|
1.0
|
|
CG
|
B:ARG442
|
4.9
|
168.3
|
1.0
|
|
NE
|
B:ARG442
|
4.9
|
168.3
|
1.0
|
|
CE
|
B:LYS440
|
4.9
|
163.6
|
1.0
|
|
NZ
|
B:LYS440
|
5.0
|
163.6
|
1.0
|
|
Fluorine binding site 6 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 6 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:129.2
occ:1.00
|
F2
|
C:ALF1002
|
0.0
|
129.2
|
1.0
|
|
AL
|
C:ALF1002
|
1.8
|
129.2
|
1.0
|
|
NE2
|
C:GLN384
|
2.5
|
133.8
|
1.0
|
|
F4
|
C:ALF1002
|
2.5
|
129.2
|
1.0
|
|
F3
|
C:ALF1002
|
2.5
|
129.2
|
1.0
|
|
O2B
|
C:ADP1001
|
2.7
|
147.2
|
1.0
|
|
OE2
|
C:GLU262
|
3.4
|
129.2
|
1.0
|
|
CA
|
C:PRO233
|
3.5
|
144.7
|
1.0
|
|
CB
|
C:PRO233
|
3.5
|
144.7
|
1.0
|
|
F1
|
C:ALF1002
|
3.6
|
129.2
|
1.0
|
|
CD
|
C:GLN384
|
3.7
|
133.8
|
1.0
|
|
CG
|
C:PRO233
|
3.9
|
144.7
|
1.0
|
|
PB
|
C:ADP1001
|
4.0
|
147.2
|
1.0
|
|
MG
|
C:MG1003
|
4.2
|
129.2
|
1.0
|
|
CG
|
C:GLN384
|
4.3
|
133.8
|
1.0
|
|
N
|
C:PRO233
|
4.3
|
144.7
|
1.0
|
|
CD
|
C:GLU262
|
4.3
|
129.2
|
1.0
|
|
O3B
|
C:ADP1001
|
4.5
|
147.2
|
1.0
|
|
CE
|
C:LYS237
|
4.6
|
150.7
|
1.0
|
|
NZ
|
C:LYS237
|
4.6
|
150.7
|
1.0
|
|
OE1
|
C:GLU262
|
4.6
|
129.2
|
1.0
|
|
N
|
C:SER234
|
4.6
|
153.1
|
1.0
|
|
O
|
B:GLN410
|
4.6
|
162.6
|
1.0
|
|
C
|
C:PRO233
|
4.6
|
144.7
|
1.0
|
|
OE1
|
C:GLN384
|
4.7
|
133.8
|
1.0
|
|
NZ
|
B:LYS440
|
4.7
|
163.6
|
1.0
|
|
CD
|
C:PRO233
|
4.8
|
144.7
|
1.0
|
|
O1B
|
C:ADP1001
|
4.8
|
147.2
|
1.0
|
|
CA
|
B:GLN410
|
4.8
|
162.6
|
1.0
|
|
O2A
|
C:ADP1001
|
5.0
|
147.2
|
1.0
|
|
C
|
C:ARG232
|
5.0
|
150.6
|
1.0
|
|
Fluorine binding site 7 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 7 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:129.2
occ:1.00
|
F3
|
C:ALF1002
|
0.0
|
129.2
|
1.0
|
|
AL
|
C:ALF1002
|
1.8
|
129.2
|
1.0
|
|
F1
|
C:ALF1002
|
2.5
|
129.2
|
1.0
|
|
F2
|
C:ALF1002
|
2.5
|
129.2
|
1.0
|
|
O2B
|
C:ADP1001
|
2.7
|
147.2
|
1.0
|
|
NZ
|
B:LYS440
|
2.8
|
163.6
|
1.0
|
|
O2A
|
C:ADP1001
|
3.1
|
147.2
|
1.0
|
|
CE
|
B:LYS440
|
3.1
|
163.6
|
1.0
|
|
CB
|
C:PRO233
|
3.4
|
144.7
|
1.0
|
|
OE2
|
C:GLU262
|
3.5
|
129.2
|
1.0
|
|
N
|
C:SER234
|
3.6
|
153.1
|
1.0
|
|
F4
|
C:ALF1002
|
3.6
|
129.2
|
1.0
|
|
CA
|
C:PRO233
|
3.7
|
144.7
|
1.0
|
|
PB
|
C:ADP1001
|
4.0
|
147.2
|
1.0
|
|
C
|
C:PRO233
|
4.1
|
144.7
|
1.0
|
|
MG
|
C:MG1003
|
4.2
|
129.2
|
1.0
|
|
PA
|
C:ADP1001
|
4.3
|
147.2
|
1.0
|
|
O3A
|
C:ADP1001
|
4.3
|
147.2
|
1.0
|
|
CD
|
B:LYS440
|
4.5
|
163.6
|
1.0
|
|
CG
|
C:PRO233
|
4.5
|
144.7
|
1.0
|
|
CA
|
C:SER234
|
4.6
|
153.1
|
1.0
|
|
O
|
B:GLU409
|
4.6
|
153.7
|
1.0
|
|
O3B
|
C:ADP1001
|
4.6
|
147.2
|
1.0
|
|
O
|
B:GLN410
|
4.6
|
162.6
|
1.0
|
|
NE2
|
C:GLN384
|
4.7
|
133.8
|
1.0
|
|
CD
|
C:GLU262
|
4.7
|
129.2
|
1.0
|
|
OG
|
C:SER234
|
4.8
|
153.1
|
1.0
|
|
O
|
B:ALA412
|
4.9
|
164.1
|
1.0
|
|
Fluorine binding site 8 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 8 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:129.2
occ:1.00
|
F4
|
C:ALF1002
|
0.0
|
129.2
|
1.0
|
|
AL
|
C:ALF1002
|
1.8
|
129.2
|
1.0
|
|
MG
|
C:MG1003
|
2.0
|
129.2
|
1.0
|
|
F2
|
C:ALF1002
|
2.5
|
129.2
|
1.0
|
|
F1
|
C:ALF1002
|
2.6
|
129.2
|
1.0
|
|
OE2
|
C:GLU262
|
2.6
|
129.2
|
1.0
|
|
OE1
|
C:GLU262
|
2.7
|
129.2
|
1.0
|
|
O2B
|
C:ADP1001
|
2.8
|
147.2
|
1.0
|
|
O3B
|
C:ADP1001
|
2.8
|
147.2
|
1.0
|
|
OG1
|
C:THR238
|
3.0
|
140.2
|
1.0
|
|
CD
|
C:GLU262
|
3.0
|
129.2
|
1.0
|
|
PB
|
C:ADP1001
|
3.2
|
147.2
|
1.0
|
|
F3
|
C:ALF1002
|
3.6
|
129.2
|
1.0
|
|
CE
|
C:LYS237
|
3.8
|
150.7
|
1.0
|
|
O1B
|
C:ADP1001
|
4.2
|
147.2
|
1.0
|
|
CB
|
C:THR238
|
4.3
|
140.2
|
1.0
|
|
NZ
|
C:LYS237
|
4.4
|
150.7
|
1.0
|
|
N
|
C:THR238
|
4.5
|
140.2
|
1.0
|
|
CG
|
C:GLU262
|
4.5
|
129.2
|
1.0
|
|
O3A
|
C:ADP1001
|
4.5
|
147.2
|
1.0
|
|
NE2
|
C:GLN384
|
4.5
|
133.8
|
1.0
|
|
O2A
|
C:ADP1001
|
4.6
|
147.2
|
1.0
|
|
O1A
|
C:ADP1001
|
4.8
|
147.2
|
1.0
|
|
OD1
|
C:ASP343
|
4.8
|
145.5
|
1.0
|
|
CB
|
C:LYS237
|
4.8
|
150.7
|
1.0
|
|
PA
|
C:ADP1001
|
4.9
|
147.2
|
1.0
|
|
Fluorine binding site 9 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 9 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1002
b:139.9
occ:1.00
|
F1
|
D:ALF1002
|
0.0
|
139.9
|
1.0
|
|
AL
|
D:ALF1002
|
1.8
|
139.9
|
1.0
|
|
MG
|
D:MG1003
|
2.0
|
139.9
|
1.0
|
|
F3
|
D:ALF1002
|
2.5
|
139.9
|
1.0
|
|
OE2
|
D:GLU262
|
2.6
|
131.3
|
1.0
|
|
F4
|
D:ALF1002
|
2.6
|
139.9
|
1.0
|
|
O2B
|
D:ADP1001
|
2.7
|
139.2
|
1.0
|
|
O2A
|
D:ADP1001
|
2.8
|
139.2
|
1.0
|
|
O1A
|
D:ADP1001
|
2.8
|
139.2
|
1.0
|
|
O3B
|
D:ADP1001
|
2.9
|
139.2
|
1.0
|
|
PA
|
D:ADP1001
|
3.1
|
139.2
|
1.0
|
|
PB
|
D:ADP1001
|
3.2
|
139.2
|
1.0
|
|
CD
|
D:GLU262
|
3.5
|
131.3
|
1.0
|
|
O3A
|
D:ADP1001
|
3.6
|
139.2
|
1.0
|
|
F2
|
D:ALF1002
|
3.6
|
139.9
|
1.0
|
|
OE1
|
D:GLU262
|
3.8
|
131.3
|
1.0
|
|
OG1
|
D:THR238
|
4.0
|
135.2
|
1.0
|
|
NE
|
C:ARG442
|
4.4
|
146.8
|
1.0
|
|
CG
|
C:ARG442
|
4.5
|
146.8
|
1.0
|
|
O5'
|
D:ADP1001
|
4.7
|
139.2
|
1.0
|
|
O1B
|
D:ADP1001
|
4.7
|
139.2
|
1.0
|
|
NZ
|
C:LYS440
|
4.7
|
141.8
|
1.0
|
|
CE
|
C:LYS440
|
4.7
|
141.8
|
1.0
|
|
CG
|
D:GLU262
|
4.8
|
131.3
|
1.0
|
|
CB
|
D:THR238
|
4.8
|
135.2
|
1.0
|
|
NH2
|
D:ARG271
|
4.8
|
140.7
|
1.0
|
|
CD
|
C:ARG442
|
4.9
|
146.8
|
1.0
|
|
NH1
|
D:ARG271
|
5.0
|
140.7
|
1.0
|
|
SD
|
D:MET263
|
5.0
|
136.6
|
1.0
|
|
Fluorine binding site 10 out
of 20 in 7t22
Go back to
Fluorine Binding Sites List in 7t22
Fluorine binding site 10 out
of 20 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1002
b:139.9
occ:1.00
|
F2
|
D:ALF1002
|
0.0
|
139.9
|
1.0
|
|
AL
|
D:ALF1002
|
1.8
|
139.9
|
1.0
|
|
F4
|
D:ALF1002
|
2.5
|
139.9
|
1.0
|
|
F3
|
D:ALF1002
|
2.5
|
139.9
|
1.0
|
|
O2B
|
D:ADP1001
|
2.7
|
139.2
|
1.0
|
|
NE2
|
D:GLN384
|
3.1
|
131.0
|
1.0
|
|
CD
|
D:GLN384
|
3.3
|
131.0
|
1.0
|
|
OE1
|
D:GLN384
|
3.5
|
131.0
|
1.0
|
|
F1
|
D:ALF1002
|
3.6
|
139.9
|
1.0
|
|
OE2
|
D:GLU262
|
3.6
|
131.3
|
1.0
|
|
CA
|
D:PRO233
|
4.0
|
128.9
|
1.0
|
|
CB
|
D:PRO233
|
4.0
|
128.9
|
1.0
|
|
PB
|
D:ADP1001
|
4.1
|
139.2
|
1.0
|
|
CG
|
D:GLN384
|
4.2
|
131.0
|
1.0
|
|
MG
|
D:MG1003
|
4.2
|
139.9
|
1.0
|
|
CD
|
D:GLU262
|
4.3
|
131.3
|
1.0
|
|
OE1
|
D:GLU262
|
4.3
|
131.3
|
1.0
|
|
CG
|
D:PRO233
|
4.4
|
128.9
|
1.0
|
|
O3B
|
D:ADP1001
|
4.6
|
139.2
|
1.0
|
|
CE
|
D:LYS237
|
4.6
|
143.5
|
1.0
|
|
NZ
|
C:LYS440
|
4.6
|
141.8
|
1.0
|
|
O
|
C:GLN410
|
4.6
|
141.0
|
1.0
|
|
NZ
|
D:LYS237
|
4.6
|
143.5
|
1.0
|
|
N
|
D:PRO233
|
4.7
|
128.9
|
1.0
|
|
O1B
|
D:ADP1001
|
4.8
|
139.2
|
1.0
|
|
CA
|
C:GLN410
|
4.8
|
141.0
|
1.0
|
|
Reference:
A.J.Oakley,
Z.Q.Xu.
Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Wed Jul 16 00:23:18 2025
|
