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Fluorine in PDB 7t3b: GATOR1-Rag-Ragulator - Gap Complex

Other elements in 7t3b:

The structure of GATOR1-Rag-Ragulator - Gap Complex also contains other interesting chemical elements:

Aluminium (Al) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the GATOR1-Rag-Ragulator - Gap Complex (pdb code 7t3b). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the GATOR1-Rag-Ragulator - Gap Complex, PDB code: 7t3b:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7t3b

Go back to Fluorine Binding Sites List in 7t3b
Fluorine binding site 1 out of 6 in the GATOR1-Rag-Ragulator - Gap Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of GATOR1-Rag-Ragulator - Gap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F502

b:303.3
occ:1.00
F1 E:AF3502 0.0 303.3 1.0
AL E:AF3502 1.7 303.3 1.0
NZ E:LYS74 2.6 282.3 1.0
O2B E:GDP501 2.6 268.1 1.0
O E:THR96 2.7 303.9 1.0
F3 E:AF3502 2.9 303.3 1.0
F2 E:AF3502 3.0 303.3 1.0
N E:THR96 3.1 303.9 1.0
O1B E:GDP501 3.2 268.1 1.0
PB E:GDP501 3.2 268.1 1.0
CE E:LYS74 3.3 282.3 1.0
C E:THR96 3.3 303.9 1.0
CB E:THR96 3.3 303.9 1.0
CA E:THR96 3.4 303.9 1.0
O3B E:GDP501 3.5 268.1 1.0
O E:PHE117 3.7 305.2 1.0
N E:GLY119 3.7 301.4 1.0
OG1 E:THR96 3.9 303.9 1.0
C E:SER95 4.1 298.7 1.0
CA E:GLY119 4.1 301.4 1.0
OG E:SER75 4.4 276.1 1.0
N E:ASN97 4.4 306.9 1.0
C E:PRO118 4.5 308.8 1.0
CA E:SER95 4.6 298.7 1.0
CG2 E:THR96 4.6 303.9 1.0
CD E:LYS74 4.6 282.3 1.0
OD1 E:ASP116 4.7 294.4 1.0
CA E:PRO118 4.7 308.8 1.0
O3A E:GDP501 4.8 268.1 1.0
CE E:MET67 4.8 278.2 1.0
C E:PHE117 4.8 305.2 1.0
O E:SER95 4.9 298.7 1.0

Fluorine binding site 2 out of 6 in 7t3b

Go back to Fluorine Binding Sites List in 7t3b
Fluorine binding site 2 out of 6 in the GATOR1-Rag-Ragulator - Gap Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of GATOR1-Rag-Ragulator - Gap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F502

b:303.3
occ:1.00
F2 E:AF3502 0.0 303.3 1.0
AL E:AF3502 1.7 303.3 1.0
O1B E:GDP501 2.3 268.1 1.0
F1 E:AF3502 3.0 303.3 1.0
F3 E:AF3502 3.0 303.3 1.0
N E:ARG71 3.0 256.7 1.0
CD E:ARG70 3.3 263.6 1.0
CA E:GLY119 3.3 301.4 1.0
NE E:ARG70 3.5 263.6 1.0
CA E:ARG70 3.5 263.6 1.0
PB E:GDP501 3.6 268.1 1.0
C E:ARG70 3.7 263.6 1.0
O2B E:GDP501 3.9 268.1 1.0
CA E:ARG71 4.0 256.7 1.0
N E:GLY119 4.0 301.4 1.0
CB E:ARG70 4.0 263.6 1.0
CG E:ARG70 4.2 263.6 1.0
O3B E:GDP501 4.2 268.1 1.0
O E:LEU69 4.3 265.7 1.0
C E:GLY119 4.3 301.4 1.0
N E:ARG70 4.6 263.6 1.0
CE E:LYS74 4.7 282.3 1.0
CZ E:ARG70 4.7 263.6 1.0
O1A E:GDP501 4.8 268.1 1.0
O E:GLY119 4.8 301.4 1.0
O3A E:GDP501 4.8 268.1 1.0
NZ E:LYS74 4.8 282.3 1.0
CG E:ARG71 4.9 256.7 1.0
C E:LEU69 4.9 265.7 1.0
CB E:ARG71 4.9 256.7 1.0
N E:SER72 4.9 271.1 1.0
CD E:ARG71 4.9 256.7 1.0
O E:ARG70 5.0 263.6 1.0
N E:THR96 5.0 303.9 1.0

Fluorine binding site 3 out of 6 in 7t3b

Go back to Fluorine Binding Sites List in 7t3b
Fluorine binding site 3 out of 6 in the GATOR1-Rag-Ragulator - Gap Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of GATOR1-Rag-Ragulator - Gap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F502

b:303.3
occ:1.00
F3 E:AF3502 0.0 303.3 1.0
AL E:AF3502 1.7 303.3 1.0
NE E:ARG70 2.8 263.6 1.0
F1 E:AF3502 2.9 303.3 1.0
F2 E:AF3502 3.0 303.3 1.0
C E:SER95 3.2 298.7 1.0
CD E:ARG70 3.3 263.6 1.0
CB E:SER95 3.3 298.7 1.0
N E:THR96 3.3 303.9 1.0
CZ E:ARG70 3.4 263.6 1.0
CA E:SER95 3.5 298.7 1.0
N E:GLY119 3.5 301.4 1.0
C E:THR96 3.6 303.9 1.0
O E:THR96 3.6 303.9 1.0
O E:SER95 3.7 298.7 1.0
NH2 E:ARG70 3.7 263.6 1.0
CA E:GLY119 3.8 301.4 1.0
N E:ASN97 3.9 306.9 1.0
O1B E:GDP501 4.0 268.1 1.0
O2B E:GDP501 4.0 268.1 1.0
CA E:THR96 4.1 303.9 1.0
CA E:ASN97 4.3 306.9 1.0
NH1 E:ARG70 4.3 263.6 1.0
OG E:SER95 4.4 298.7 1.0
CB E:ASN97 4.5 306.9 1.0
O E:GLY119 4.5 301.4 1.0
PB E:GDP501 4.7 268.1 1.0
C E:GLY119 4.7 301.4 1.0
C E:PRO118 4.7 308.8 1.0
CG E:ARG70 4.8 263.6 1.0
N E:SER95 5.0 298.7 1.0
CA E:PRO118 5.0 308.8 1.0

Fluorine binding site 4 out of 6 in 7t3b

Go back to Fluorine Binding Sites List in 7t3b
Fluorine binding site 4 out of 6 in the GATOR1-Rag-Ragulator - Gap Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of GATOR1-Rag-Ragulator - Gap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F601

b:131.5
occ:1.00
F1 D:AF3601 0.0 131.5 1.0
AL D:AF3601 1.7 131.5 1.0
OG1 D:THR42 2.3 122.1 1.0
O2B B:GDP501 2.6 142.5 1.0
O D:THR42 2.7 122.1 1.0
O1B B:GDP501 2.8 142.5 1.0
F3 D:AF3601 2.9 131.5 1.0
F2 D:AF3601 2.9 131.5 1.0
PB B:GDP501 3.3 142.5 1.0
CE D:LYS20 3.3 124.5 1.0
NZ D:LYS20 3.5 124.5 1.0
CB D:THR42 3.6 122.1 1.0
C D:THR42 3.6 122.1 1.0
N D:THR42 3.8 122.1 1.0
CA D:THR42 3.9 122.1 1.0
O D:CYS63 3.9 161.1 1.0
CA D:GLY64 4.0 135.4 1.0
OG1 D:THR21 4.1 119.6 1.0
N D:GLY65 4.2 142.7 1.0
O3B B:GDP501 4.4 142.5 1.0
O3A B:GDP501 4.4 142.5 1.0
CD D:LYS20 4.5 124.5 1.0
CG2 D:THR42 4.6 122.1 1.0
C D:GLY64 4.6 135.4 1.0
CG D:LYS20 4.7 124.5 1.0
C D:CYS63 4.7 161.1 1.0
NH2 B:ARG78 4.8 126.1 1.0
N D:GLY64 4.8 135.4 1.0
OE1 D:GLN66 4.8 131.6 1.0
C D:ALA41 4.8 118.0 1.0
N D:ILE43 4.9 131.2 1.0
OD1 D:ASP62 5.0 146.8 1.0

Fluorine binding site 5 out of 6 in 7t3b

Go back to Fluorine Binding Sites List in 7t3b
Fluorine binding site 5 out of 6 in the GATOR1-Rag-Ragulator - Gap Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of GATOR1-Rag-Ragulator - Gap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F601

b:131.5
occ:1.00
F2 D:AF3601 0.0 131.5 1.0
AL D:AF3601 1.7 131.5 1.0
OE1 D:GLN66 2.6 131.6 1.0
NE2 D:GLN66 2.9 131.6 1.0
F3 D:AF3601 2.9 131.5 1.0
F1 D:AF3601 2.9 131.5 1.0
O D:THR42 3.0 122.1 1.0
CD D:GLN66 3.1 131.6 1.0
NH2 B:ARG78 3.2 126.1 1.0
O1B B:GDP501 3.7 142.5 1.0
O2B B:GDP501 3.9 142.5 1.0
C D:THR42 3.9 122.1 1.0
N D:GLY65 4.1 142.7 1.0
N D:THR42 4.1 122.1 1.0
PB B:GDP501 4.2 142.5 1.0
O3B B:GDP501 4.3 142.5 1.0
CZ B:ARG78 4.3 126.1 1.0
C D:ALA41 4.4 118.0 1.0
CG2 D:ILE43 4.4 131.2 1.0
CA D:ALA41 4.4 118.0 1.0
CB D:ALA41 4.5 118.0 1.0
OG1 D:THR42 4.5 122.1 1.0
CA D:GLY64 4.6 135.4 1.0
CG D:GLN66 4.6 131.6 1.0
CA D:THR42 4.6 122.1 1.0
OG D:SER16 4.7 131.4 1.0
N D:ILE43 4.8 131.2 1.0
CZ B:PHE15 4.8 119.8 1.0
CA D:ILE43 4.8 131.2 1.0
C D:GLY64 4.9 135.4 1.0
N D:GLN66 4.9 131.6 1.0
NE B:ARG78 5.0 126.1 1.0

Fluorine binding site 6 out of 6 in 7t3b

Go back to Fluorine Binding Sites List in 7t3b
Fluorine binding site 6 out of 6 in the GATOR1-Rag-Ragulator - Gap Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of GATOR1-Rag-Ragulator - Gap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F601

b:131.5
occ:1.00
F3 D:AF3601 0.0 131.5 1.0
AL D:AF3601 1.7 131.5 1.0
O2B B:GDP501 2.3 142.5 1.0
NZ D:LYS20 2.4 124.5 1.0
F1 D:AF3601 2.9 131.5 1.0
F2 D:AF3601 2.9 131.5 1.0
CA D:SER16 3.3 131.4 1.0
CE D:LYS20 3.3 124.5 1.0
PB B:GDP501 3.4 142.5 1.0
O3B B:GDP501 3.7 142.5 1.0
O D:LYS15 3.7 134.4 1.0
N D:GLY65 3.7 142.7 1.0
OE1 D:GLN66 3.9 131.6 1.0
N D:SER16 3.9 131.4 1.0
N D:GLY17 3.9 129.3 1.0
OG D:SER16 3.9 131.4 1.0
NH2 B:ARG78 3.9 126.1 1.0
CA D:GLY65 4.0 142.7 1.0
O1B B:GDP501 4.0 142.5 1.0
CB D:SER16 4.0 131.4 1.0
C D:LYS15 4.1 134.4 1.0
C D:SER16 4.1 131.4 1.0
CZ B:ARG78 4.3 126.1 1.0
O1A B:GDP501 4.3 142.5 1.0
CD D:GLN66 4.6 131.6 1.0
NE B:ARG78 4.7 126.1 1.0
NE2 D:GLN66 4.7 131.6 1.0
CD D:LYS20 4.7 124.5 1.0
O3A B:GDP501 4.7 142.5 1.0
NH1 B:ARG78 4.7 126.1 1.0
C D:GLY65 4.7 142.7 1.0
C D:GLY64 4.8 135.4 1.0
O D:THR42 4.9 122.1 1.0

Reference:

S.B.Egri, C.Ouch, H.T.Chou, Z.Yu, K.Song, C.Xu, K.Shen. Cryo-Em Structures of the Human GATOR1-Rag-Ragulator Complex Reveal A Spatial-Constraint Regulated Gap Mechanism. Mol.Cell V. 82 1836 2022.
ISSN: ISSN 1097-2765
PubMed: 35338845
DOI: 10.1016/J.MOLCEL.2022.03.002
Page generated: Wed Jul 16 00:24:36 2025

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