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Fluorine in PDB 7u9b: Crystal Structure of Indoline 7 with Kpc-2

Enzymatic activity of Crystal Structure of Indoline 7 with Kpc-2

All present enzymatic activity of Crystal Structure of Indoline 7 with Kpc-2:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Indoline 7 with Kpc-2, PDB code: 7u9b was solved by A.Akhtar, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.06 / 1.95
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.71, 58.91, 76.66, 90, 90, 90
R / Rfree (%) 17.9 / 22.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Indoline 7 with Kpc-2 (pdb code 7u9b). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Indoline 7 with Kpc-2, PDB code: 7u9b:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7u9b

Go back to Fluorine Binding Sites List in 7u9b
Fluorine binding site 1 out of 3 in the Crystal Structure of Indoline 7 with Kpc-2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Indoline 7 with Kpc-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:63.9
occ:0.78
F09 A:M2I301 0.0 63.9 0.8
C08 A:M2I301 1.4 63.2 0.8
F11 A:M2I301 2.2 71.3 0.8
F10 A:M2I301 2.2 65.0 0.8
C07 A:M2I301 2.4 47.7 0.8
C06 A:M2I301 2.7 46.8 0.8
C12 A:M2I301 3.6 41.3 0.8
C05 A:M2I301 4.1 48.5 0.8
C03 A:M2I301 4.7 39.8 0.8
C04 A:M2I301 4.9 43.0 0.8

Fluorine binding site 2 out of 3 in 7u9b

Go back to Fluorine Binding Sites List in 7u9b
Fluorine binding site 2 out of 3 in the Crystal Structure of Indoline 7 with Kpc-2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Indoline 7 with Kpc-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:65.0
occ:0.78
F10 A:M2I301 0.0 65.0 0.8
C08 A:M2I301 1.4 63.2 0.8
F11 A:M2I301 2.2 71.3 0.8
F09 A:M2I301 2.2 63.9 0.8
C07 A:M2I301 2.3 47.7 0.8
C12 A:M2I301 2.8 41.3 0.8
C06 A:M2I301 3.5 46.8 0.8
C03 A:M2I301 4.1 39.8 0.8
C05 A:M2I301 4.6 48.5 0.8
O A:HOH479 4.7 29.8 1.0
C04 A:M2I301 4.9 43.0 0.8

Fluorine binding site 3 out of 3 in 7u9b

Go back to Fluorine Binding Sites List in 7u9b
Fluorine binding site 3 out of 3 in the Crystal Structure of Indoline 7 with Kpc-2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Indoline 7 with Kpc-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:71.3
occ:0.78
F11 A:M2I301 0.0 71.3 0.8
C08 A:M2I301 1.4 63.2 0.8
F10 A:M2I301 2.2 65.0 0.8
F09 A:M2I301 2.2 63.9 0.8
C07 A:M2I301 2.4 47.7 0.8
C12 A:M2I301 3.1 41.3 0.8
O A:HOH479 3.3 29.8 1.0
C06 A:M2I301 3.3 46.8 0.8
C03 A:M2I301 4.3 39.8 0.8
C05 A:M2I301 4.5 48.5 0.8
C04 A:M2I301 4.9 43.0 0.8

Reference:

K.Defrees, E.M.Cambeis, Y.Chen, A.R.Renslo. Probing the Binding Hot Spots of Kpc-2 Carbapenemase Using Reversible Tetrazole-Based Inhibitors To Be Published.
Page generated: Wed Jul 16 00:53:13 2025

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