Atomistry » Fluorine » PDB 7v3t-7vr7 » 7vc3
Atomistry »
  Fluorine »
    PDB 7v3t-7vr7 »
      7vc3 »

Fluorine in PDB 7vc3: Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution

Protein crystallography data

The structure of Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution, PDB code: 7vc3 was solved by N.Malhotra, Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.68 / 1.97
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.733, 73.644, 74.906, 90, 111.38, 90
R / Rfree (%) 17.5 / 21.7

Other elements in 7vc3:

The structure of Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 11 atoms
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution (pdb code 7vc3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution, PDB code: 7vc3:

Fluorine binding site 1 out of 1 in 7vc3

Go back to Fluorine Binding Sites List in 7vc3
Fluorine binding site 1 out of 1 in the Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Toxoplasma Gondii Prolyl-Trna Synthetase (Tgprs) in Complex with Inhibitor L97 and L-Proline at 1.97 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1001

b:45.5
occ:0.94
F A:1XK1001 0.0 45.5 0.9
C10 A:1XK1001 1.3 49.0 0.9
C11 A:1XK1001 2.3 46.5 0.9
C9 A:1XK1001 2.3 43.8 0.9
CB A:PRO476 3.2 52.8 1.0
CA A:PRO476 3.3 51.9 1.0
O A:LYS474 3.3 52.6 1.0
NE A:ARG483 3.4 78.8 1.0
N A:PRO476 3.5 56.2 1.0
C12 A:1XK1001 3.5 43.0 0.9
C8 A:1XK1001 3.6 47.0 0.9
CG A:ARG483 3.7 59.0 1.0
CD A:PRO476 3.9 57.6 1.0
C A:GLN475 3.9 51.1 1.0
CG A:PRO476 4.0 61.8 1.0
O A:ARG481 4.0 40.5 1.0
C13 A:1XK1001 4.0 44.7 0.9
NH2 A:ARG483 4.2 84.4 1.0
CD A:ARG483 4.2 60.4 1.0
O A:GLU472 4.2 66.4 1.0
O A:GLN475 4.2 56.8 1.0
CZ A:ARG483 4.3 84.4 1.0
C A:LYS474 4.3 63.8 1.0
CA A:GLY363 4.3 54.0 1.0
N A:ARG483 4.4 38.4 1.0
CA A:THR482 4.6 44.4 1.0
C A:THR482 4.6 43.8 1.0
C A:ARG481 4.6 49.7 1.0
C A:PRO476 4.7 50.8 1.0
C14 A:1XK1001 4.7 44.8 0.9
CA A:GLN475 4.8 60.9 1.0
CB A:ARG483 4.8 42.1 1.0
C7 A:1XK1001 4.8 44.2 0.9
CB A:GLU472 4.9 61.1 1.0
N A:THR482 4.9 50.1 1.0
N A:GLN475 4.9 64.0 1.0
CA A:ARG483 4.9 41.5 1.0
O A:GLY363 5.0 55.6 1.0

Reference:

N.Malhotra, Y.Manickam, A.Sharma. Tgprs with Inhibitor L97 To Be Published.
Page generated: Wed Jul 16 01:11:56 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy