Fluorine in PDB 7vdt: The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex

The structure of The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex (pdb code 7vdt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex, PDB code: 7vdt:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1701 b:66.5 occ:1.00 F1 A:BEF1701 0.0 66.5 1.0 BE A:BEF1701 1.7 66.5 1.0 NH1 A:ARG1189 2.3 63.0 1.0 F3 A:BEF1701 2.6 66.5 1.0 F2 A:BEF1701 2.8 66.5 1.0 NH2 A:ARG1189 2.8 63.0 1.0 NH2 A:ARG1192 2.9 66.3 1.0 CZ A:ARG1189 3.0 63.0 1.0 O A:MET781 3.4 68.5 1.0 O1B A:ADP1703 3.7 66.6 1.0 CZ A:ARG1192 3.7 66.3 1.0 NH1 A:ARG1192 3.8 66.3 1.0 CA A:GLY1162 3.9 60.0 1.0 PB A:ADP1703 4.2 66.6 1.0 O2B A:ADP1703 4.2 66.6 1.0 OE2 A:GLU882 4.2 61.2 1.0 C A:MET781 4.2 68.5 1.0 NE A:ARG1189 4.3 63.0 1.0 OE1 A:GLN1185 4.3 64.6 1.0 O3B A:ADP1703 4.4 66.6 1.0 CB A:MET781 4.4 68.5 1.0 CA A:MET781 4.5 68.5 1.0 N A:GLY1162 4.5 60.0 1.0 MG A:MG1702 4.8 63.1 1.0 C A:LEU1161 4.8 59.9 1.0 N A:LEU1163 4.8 59.4 1.0 O A:LEU1161 4.8 59.9 1.0 C A:GLY1162 4.9 60.0 1.0 NE A:ARG1192 5.0 66.3 1.0

Fluorine binding site 2 out of 3 in the The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1701 b:66.5 occ:1.00 F2 A:BEF1701 0.0 66.5 1.0 BE A:BEF1701 1.7 66.5 1.0 MG A:MG1702 2.0 63.1 1.0 O2B A:ADP1703 2.2 66.6 1.0 F3 A:BEF1701 2.7 66.5 1.0 F1 A:BEF1701 2.8 66.5 1.0 PB A:ADP1703 3.2 66.6 1.0 OE2 A:GLU882 3.3 61.2 1.0 O1B A:ADP1703 3.4 66.6 1.0 CA A:GLY1162 3.9 60.0 1.0 O3B A:ADP1703 3.9 66.6 1.0 O1A A:ADP1703 4.0 66.6 1.0 NH1 A:ARG1192 4.1 66.3 1.0 CD A:GLU882 4.4 61.2 1.0 O3A A:ADP1703 4.5 66.6 1.0 N A:GLY1162 4.7 60.0 1.0 OD1 A:ASP881 4.7 57.5 1.0 CE A:LYS785 4.8 63.8 1.0 NH2 A:ARG1192 4.8 66.3 1.0 NH2 A:ARG1189 4.8 63.0 1.0 NZ A:LYS785 4.9 63.8 1.0 PA A:ADP1703 4.9 66.6 1.0 CZ A:ARG1192 4.9 66.3 1.0 OD2 A:ASP881 5.0 57.5 1.0 CG A:GLU882 5.0 61.2 1.0

Fluorine binding site 3 out of 3 in the The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Motor-Nucleosome Module of Human Chromatin Remodeling Pbaf- Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F1701 b:66.5 occ:1.00 F3 A:BEF1701 0.0 66.5 1.0 BE A:BEF1701 1.7 66.5 1.0 F1 A:BEF1701 2.6 66.5 1.0 O3B A:ADP1703 2.6 66.6 1.0 F2 A:BEF1701 2.7 66.5 1.0 O2B A:ADP1703 3.0 66.6 1.0 NZ A:LYS785 3.0 63.8 1.0 PB A:ADP1703 3.1 66.6 1.0 CA A:MET781 3.3 68.5 1.0 O A:MET781 3.4 68.5 1.0 C A:MET781 3.4 68.5 1.0 O1B A:ADP1703 3.6 66.6 1.0 CE A:LYS785 3.7 63.8 1.0 CB A:MET781 3.9 68.5 1.0 OE2 A:GLU882 4.0 61.2 1.0 O A:GLU780 4.2 72.4 1.0 N A:GLY782 4.3 66.9 1.0 MG A:MG1702 4.3 63.1 1.0 NH2 A:ARG1192 4.4 66.3 1.0 CG A:MET781 4.4 68.5 1.0 NH1 A:ARG1192 4.4 66.3 1.0 N A:MET781 4.4 68.5 1.0 NH1 A:ARG1189 4.4 63.0 1.0 O3A A:ADP1703 4.6 66.6 1.0 C A:GLU780 4.7 72.4 1.0 CZ A:ARG1192 4.9 66.3 1.0 CA A:GLY782 4.9 66.9 1.0

J.J.Yuan, K.J.Chen, W.B.Zhang, Z.C.Chen. Structure of Human Chromatin-Remodelling Pbaf Complex Bound to A Nucleosome. Nature V. 605 166 2022.
ISSN: ESSN 1476-4687
PubMed: 35477757
DOI: 10.1038/S41586-022-04658-5