Fluorine in PDB 7w0v: C4'-SCF3-Dt Modifeid Dna-Dna Duplex

The binding sites of Fluorine atom in the C4'-SCF3-Dt Modifeid Dna-Dna Duplex (pdb code 7w0v). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the C4'-SCF3-Dt Modifeid Dna-Dna Duplex, PDB code: 7w0v:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the C4'-SCF3-Dt Modifeid Dna-Dna Duplex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of C4'-SCF3-Dt Modifeid Dna-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:F5 b:0.0 occ:1.00 F1 A:84E5 0.0 0.0 1.0 C6' A:84E5 1.4 0.0 1.0 F3 A:84E5 2.2 0.0 1.0 F2 A:84E5 2.2 0.0 1.0 H1' A:84E5 2.5 0.0 1.0 H5' A:DA6 2.5 0.0 1.0 S4' A:84E5 2.7 0.0 1.0 O3' A:84E5 3.0 0.0 1.0 O4' A:84E5 3.1 0.0 1.0 C1' A:84E5 3.2 0.0 1.0 C4' A:84E5 3.2 0.0 1.0 C3' A:84E5 3.5 0.0 1.0 C5' A:DA6 3.6 0.0 1.0 H4' B:DT18 3.8 0.0 1.0 C2' A:84E5 3.8 0.0 1.0 H2'' A:84E5 4.0 0.0 1.0 O5' A:DA6 4.1 0.0 1.0 H5'' A:DA6 4.1 0.0 1.0 P A:DA6 4.2 0.0 1.0 O2 A:84E5 4.2 0.0 1.0 O4' A:DA6 4.3 0.0 1.0 C4' A:DA6 4.4 0.0 1.0 N1 A:84E5 4.5 0.0 1.0 O4' B:DT18 4.5 0.0 1.0 H3' A:84E5 4.5 0.0 1.0 H4' A:DA6 4.6 0.0 1.0 OP1 A:DA6 4.6 0.0 1.0 C4' B:DT18 4.6 0.0 1.0 H1' B:DT18 4.7 0.0 1.0 C5' A:84E5 4.7 0.0 1.0 H2 B:DA17 4.7 0.0 1.0 C2 A:84E5 4.8 0.0 1.0 H5' B:DG19 4.8 0.0 1.0 H2' A:84E5 4.9 0.0 1.0 H5' A:84E5 4.9 0.0 1.0

Fluorine binding site 2 out of 3 in the C4'-SCF3-Dt Modifeid Dna-Dna Duplex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of C4'-SCF3-Dt Modifeid Dna-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:F5 b:0.0 occ:1.00 F2 A:84E5 0.0 0.0 1.0 C6' A:84E5 1.4 0.0 1.0 F3 A:84E5 2.2 0.0 1.0 F1 A:84E5 2.2 0.0 1.0 S4' A:84E5 2.7 0.0 1.0 O4' A:84E5 2.8 0.0 1.0 H1' B:DT18 3.0 0.0 1.0 H1' A:84E5 3.3 0.0 1.0 C4' A:84E5 3.4 0.0 1.0 H5' B:DG19 3.4 0.0 1.0 O2 B:DT18 3.5 0.0 1.0 H2 B:DA17 3.6 0.0 1.0 C1' A:84E5 3.6 0.0 1.0 O4' B:DT18 3.6 0.0 1.0 C1' B:DT18 3.8 0.0 1.0 H4' B:DT18 3.8 0.0 1.0 O2 A:DT4 3.9 0.0 1.0 H5' A:84E5 4.2 0.0 1.0 C4' B:DT18 4.3 0.0 1.0 C2 B:DT18 4.3 0.0 1.0 O2 A:84E5 4.4 0.0 1.0 C5' A:84E5 4.4 0.0 1.0 O3' B:DT18 4.4 0.0 1.0 C3' A:84E5 4.5 0.0 1.0 N1 A:84E5 4.5 0.0 1.0 N1 B:DT18 4.5 0.0 1.0 C5' B:DG19 4.5 0.0 1.0 C2 B:DA17 4.5 0.0 1.0 O3' A:84E5 4.6 0.0 1.0 O4' B:DG19 4.6 0.0 1.0 H1' A:DT4 4.6 0.0 1.0 C2 A:84E5 4.7 0.0 1.0 H5' A:DA6 4.7 0.0 1.0 C2' A:84E5 4.7 0.0 1.0 N3 B:DA17 4.8 0.0 1.0 C3' B:DT18 4.8 0.0 1.0 H4' B:DG19 4.9 0.0 1.0 C4' B:DG19 4.9 0.0 1.0 C2' B:DT18 4.9 0.0 1.0

Fluorine binding site 3 out of 3 in the C4'-SCF3-Dt Modifeid Dna-Dna Duplex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of C4'-SCF3-Dt Modifeid Dna-Dna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ A:F5 b:0.0 occ:1.00 F3 A:84E5 0.0 0.0 1.0 C6' A:84E5 1.4 0.0 1.0 F1 A:84E5 2.2 0.0 1.0 F2 A:84E5 2.2 0.0 1.0 S4' A:84E5 2.6 0.0 1.0 H5' B:DG19 2.8 0.0 1.0 H4' B:DT18 3.0 0.0 1.0 O3' B:DT18 3.4 0.0 1.0 H1' B:DT18 3.6 0.0 1.0 C5' B:DG19 3.8 0.0 1.0 C4' B:DT18 3.8 0.0 1.0 O4' B:DT18 4.0 0.0 1.0 H5'' B:DG19 4.0 0.0 1.0 C4' A:84E5 4.2 0.0 1.0 C3' B:DT18 4.2 0.0 1.0 O4' A:84E5 4.3 0.0 1.0 C1' B:DT18 4.3 0.0 1.0 OP1 B:DG19 4.4 0.0 1.0 P B:DG19 4.4 0.0 1.0 H5' A:DA6 4.4 0.0 1.0 O3' A:84E5 4.4 0.0 1.0 O5' B:DG19 4.5 0.0 1.0 H1' A:84E5 4.5 0.0 1.0 H4' B:DG19 4.8 0.0 1.0 C4' B:DG19 4.9 0.0 1.0 C3' A:84E5 4.9 0.0 1.0 C2' B:DT18 4.9 0.0 1.0 C1' A:84E5 5.0 0.0 1.0

Q.Li, M.Trajkovski, C.Fan, J.Chen, Y.Zhou, K.Lu, H.Li, X.Su, Z.Xi, J.Plavec, C.Zhou. 4'-Scf 3 -Labeling Constitutes A Sensitive 19 F uc(Nmr) Probe For Characterization of Interactions in the Minor Groove of Dna. Angew.Chem.Int.Ed.Engl. V. 61 01848 2022.
ISSN: ESSN 1521-3773
PubMed: 36163470
DOI: 10.1002/ANIE.202201848