Atomistry » Fluorine » PDB 7vsg-7wgs » 7w1m
Atomistry »
  Fluorine »
    PDB 7vsg-7wgs »
      7w1m »

Fluorine in PDB 7w1m: Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex

Other elements in 7w1m:

The structure of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex also contains other interesting chemical elements:

Zinc (Zn) 11 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex (pdb code 7w1m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex, PDB code: 7w1m:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7w1m

Go back to Fluorine Binding Sites List in 7w1m
Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1301

b:105.2
occ:1.00
F1 B:BEF1301 0.0 105.2 1.0
BE B:BEF1301 1.8 105.2 1.0
CB B:SER1116 2.3 96.1 1.0
OG B:SER1116 2.3 96.1 1.0
O2B A:ADP2001 2.3 131.3 1.0
CA B:SER1116 2.8 96.1 1.0
F3 B:BEF1301 3.1 105.2 1.0
F2 B:BEF1301 3.1 105.2 1.0
N B:GLY1117 3.2 87.4 1.0
PB A:ADP2001 3.3 131.3 1.0
O3B A:ADP2001 3.3 131.3 1.0
C B:SER1116 3.5 96.1 1.0
O1B A:ADP2001 4.0 131.3 1.0
N B:SER1116 4.0 96.1 1.0
NH1 A:ARG57 4.3 95.9 1.0
NH2 A:ARG57 4.3 95.9 1.0
N A:GLY35 4.4 112.4 1.0
CA B:GLY1117 4.4 87.4 1.0
O3A A:ADP2001 4.6 131.3 1.0
O B:SER1116 4.7 96.1 1.0
O B:LEU1115 4.7 105.1 1.0
C B:LEU1115 4.8 105.1 1.0
CZ A:ARG57 4.8 95.9 1.0
O5' A:ADP2001 4.8 131.3 1.0
N B:GLY1118 4.9 81.8 1.0
CA A:GLY35 4.9 112.4 1.0
OG A:SER39 4.9 92.0 1.0

Fluorine binding site 2 out of 6 in 7w1m

Go back to Fluorine Binding Sites List in 7w1m
Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1301

b:105.2
occ:1.00
F2 B:BEF1301 0.0 105.2 1.0
BE B:BEF1301 1.8 105.2 1.0
NZ A:LYS38 2.5 110.0 1.0
O3B A:ADP2001 2.6 131.3 1.0
F1 B:BEF1301 3.1 105.2 1.0
F3 B:BEF1301 3.1 105.2 1.0
O1B A:ADP2001 3.2 131.3 1.0
PB A:ADP2001 3.2 131.3 1.0
N A:GLY35 3.2 112.4 1.0
O A:PRO33 3.5 138.2 1.0
CE A:LYS38 3.6 110.0 1.0
OG B:SER1116 3.6 96.1 1.0
O2B A:ADP2001 3.6 131.3 1.0
N A:SER36 3.7 122.3 1.0
CA A:ASN34 3.9 124.2 1.0
C A:ASN34 3.9 124.2 1.0
CA A:GLY35 4.0 112.4 1.0
CB B:SER1116 4.2 96.1 1.0
C A:GLY35 4.3 112.4 1.0
C A:PRO33 4.4 138.2 1.0
N A:GLY37 4.5 132.5 1.0
N A:ASN34 4.6 124.2 1.0
CA A:SER36 4.7 122.3 1.0
O3A A:ADP2001 4.7 131.3 1.0
CD A:LYS38 4.8 110.0 1.0
CB A:SER36 4.8 122.3 1.0
CG A:LYS38 4.8 110.0 1.0
CB A:LYS38 4.9 110.0 1.0
N A:LYS38 5.0 110.0 1.0
OG A:SER36 5.0 122.3 1.0
O A:ASN34 5.0 124.2 1.0
CB A:ASN34 5.0 124.2 1.0

Fluorine binding site 3 out of 6 in 7w1m

Go back to Fluorine Binding Sites List in 7w1m
Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1301

b:105.2
occ:1.00
F3 B:BEF1301 0.0 105.2 1.0
BE B:BEF1301 1.8 105.2 1.0
F1 B:BEF1301 3.1 105.2 1.0
F2 B:BEF1301 3.1 105.2 1.0
O1B A:ADP2001 3.2 131.3 1.0
O2B A:ADP2001 3.3 131.3 1.0
PB A:ADP2001 3.7 131.3 1.0
OE2 A:GLU1157 3.7 89.2 1.0
CD1 A:ILE1187 4.1 128.6 1.0
O3B A:ADP2001 4.3 131.3 1.0
CB A:SER39 4.3 92.0 1.0
OG A:SER39 4.3 92.0 1.0
OE1 A:GLN137 4.4 50.9 1.0
NZ A:LYS38 4.4 110.0 1.0
CE A:LYS38 4.5 110.0 1.0
N A:SER39 4.6 92.0 1.0
CD A:GLU1157 4.6 89.2 1.0
OG B:SER1116 5.0 96.1 1.0

Fluorine binding site 4 out of 6 in 7w1m

Go back to Fluorine Binding Sites List in 7w1m
Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1303

b:49.6
occ:1.00
F1 B:BEF1303 0.0 49.6 1.0
BE B:BEF1303 1.8 49.6 1.0
NE2 B:GLN141 2.5 40.0 1.0
O3B B:ADP1302 2.7 89.5 1.0
F3 B:BEF1303 3.1 49.6 1.0
F2 B:BEF1303 3.1 49.6 1.0
CB B:LYS38 3.4 42.5 1.0
CD B:GLN141 3.7 40.0 1.0
PB B:ADP1302 4.0 89.5 1.0
N B:SER39 4.1 39.1 1.0
OG B:SER39 4.1 39.1 1.0
CG B:LYS38 4.2 42.5 1.0
N B:LYS38 4.2 42.5 1.0
OE1 B:GLN141 4.2 40.0 1.0
CA B:LYS38 4.2 42.5 1.0
O1B B:ADP1302 4.3 89.5 1.0
C B:LYS38 4.5 42.5 1.0
OD1 B:ASP1143 4.5 92.5 1.0
CG B:GLN141 4.8 40.0 1.0
O2B B:ADP1302 4.8 89.5 1.0

Fluorine binding site 5 out of 6 in 7w1m

Go back to Fluorine Binding Sites List in 7w1m
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1303

b:49.6
occ:1.00
F2 B:BEF1303 0.0 49.6 1.0
BE B:BEF1303 1.8 49.6 1.0
N B:SER36 2.2 104.9 1.0
O3B B:ADP1302 2.6 89.5 1.0
CB B:SER36 2.7 104.9 1.0
CA B:SER36 2.8 104.9 1.0
N B:GLY37 3.0 57.1 1.0
F1 B:BEF1303 3.1 49.6 1.0
F3 B:BEF1303 3.1 49.6 1.0
C B:GLY35 3.2 82.1 1.0
C B:SER36 3.2 104.9 1.0
OG B:SER36 3.4 104.9 1.0
N B:LYS38 3.6 42.5 1.0
O B:ARG33 3.7 118.9 1.0
N B:GLY35 3.7 82.1 1.0
CA B:GLY35 3.8 82.1 1.0
PB B:ADP1302 3.9 89.5 1.0
CB B:LYS38 4.0 42.5 1.0
O3A B:ADP1302 4.0 89.5 1.0
O B:GLY35 4.2 82.1 1.0
CA B:GLY37 4.2 57.1 1.0
O B:SER36 4.3 104.9 1.0
C B:GLY37 4.4 57.1 1.0
CA B:LYS38 4.5 42.5 1.0
C B:ASN34 4.5 84.6 1.0
O2B B:ADP1302 4.7 89.5 1.0
C B:ARG33 4.9 118.9 1.0
NE2 B:GLN141 4.9 40.0 1.0
O1B B:ADP1302 4.9 89.5 1.0

Fluorine binding site 6 out of 6 in 7w1m

Go back to Fluorine Binding Sites List in 7w1m
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1303

b:49.6
occ:1.00
F3 B:BEF1303 0.0 49.6 1.0
BE B:BEF1303 1.8 49.6 1.0
OG A:SER1129 2.6 194.6 1.0
NE2 B:GLN141 3.0 40.0 1.0
F1 B:BEF1303 3.1 49.6 1.0
F2 B:BEF1303 3.1 49.6 1.0
O3B B:ADP1302 3.1 89.5 1.0
N B:GLY35 3.3 82.1 1.0
CB A:SER1129 3.5 194.6 1.0
OE1 B:GLN141 3.5 40.0 1.0
CD B:GLN141 3.6 40.0 1.0
CA B:GLY35 3.9 82.1 1.0
PB B:ADP1302 4.1 89.5 1.0
O1B B:ADP1302 4.1 89.5 1.0
N B:SER36 4.2 104.9 1.0
O3A B:ADP1302 4.3 89.5 1.0
C B:ASN34 4.4 84.6 1.0
C B:GLY35 4.5 82.1 1.0
CA B:ASN34 4.5 84.6 1.0
O B:ARG33 4.7 118.9 1.0
CA A:SER1129 4.8 194.6 1.0
CG B:GLN141 5.0 40.0 1.0

Reference:

H.Zhang, Z.Shi, X.C.Bai, H.Yu, I.J.Finkelstein. Cryo-Em Structure of Human Cohesin-Ctcf Complex To Be Published.
Page generated: Wed Jul 16 01:24:02 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy