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Fluorine in PDB 7yly: Yeast Tric-PLP2 Complex at S5 Closed Tric State

Other elements in 7yly:

The structure of Yeast Tric-PLP2 Complex at S5 Closed Tric State also contains other interesting chemical elements:

Aluminium (Al) 14 atoms
Magnesium (Mg) 16 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Fluorine atom in the Yeast Tric-PLP2 Complex at S5 Closed Tric State (pdb code 7yly). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 42 binding sites of Fluorine where determined in the Yeast Tric-PLP2 Complex at S5 Closed Tric State, PDB code: 7yly:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 42 in 7yly

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Fluorine binding site 1 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F603

b:102.0
occ:1.00
 F1 A:AF3603 0.0 102.0 1.0
AL A:AF3603 1.7 102.0 1.0
O1B A:ADP601 2.3 93.1 1.0
NZ A:LYS167 2.9 95.4 1.0
F3 A:AF3603 3.0 102.0 1.0
F2 A:AF3603 3.0 102.0 1.0
MG A:MG602 3.1 88.2 1.0
PB A:ADP601 3.3 93.1 1.0
O3B A:ADP601 3.6 93.1 1.0
O3A A:ADP601 3.7 93.1 1.0
O2A A:ADP601 3.8 93.1 1.0
CE A:LYS167 3.9 95.4 1.0
PA A:ADP601 4.1 93.1 1.0
O1A A:ADP601 4.2 93.1 1.0
OD2 A:ASP404 4.3 98.3 1.0
O A:ASN64 4.3 96.4 1.0
OG A:SER166 4.4 94.7 1.0
CA A:ASP65 4.4 99.7 1.0
OG1 A:THR99 4.5 93.9 1.0
OD1 A:ASP65 4.6 99.7 1.0
O2B A:ADP601 4.7 93.1 1.0
C A:ASN64 4.7 96.4 1.0
N A:ASP65 4.8 99.7 1.0
CB A:ASP65 5.0 99.7 1.0

Fluorine binding site 2 out of 42 in 7yly

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Fluorine binding site 2 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F603

b:102.0
occ:1.00
 F2 A:AF3603 0.0 102.0 1.0
AL A:AF3603 1.7 102.0 1.0
OD1 A:ASP65 2.6 99.7 1.0
F1 A:AF3603 3.0 102.0 1.0
F3 A:AF3603 3.0 102.0 1.0
CG A:ASP65 3.2 99.7 1.0
OD2 A:ASP404 3.2 98.3 1.0
CG A:ASP404 3.6 98.3 1.0
O3B A:ADP601 3.7 93.1 1.0
OG1 A:THR98 3.8 96.0 1.0
OD2 A:ASP65 3.8 99.7 1.0
OD1 A:ASP404 3.8 98.3 1.0
CB A:ASP65 3.9 99.7 1.0
CA A:ASP65 4.1 99.7 1.0
CB A:THR98 4.1 96.0 1.0
O1B A:ADP601 4.2 93.1 1.0
MG A:MG602 4.3 88.2 1.0
CB A:ASP404 4.4 98.3 1.0
PB A:ADP601 4.5 93.1 1.0
N A:GLY66 4.6 97.0 1.0
O A:HOH701 4.7 98.8 1.0
O A:GLY95 4.7 95.2 1.0
N A:THR98 4.9 96.0 1.0
C A:ASP65 4.9 99.7 1.0

Fluorine binding site 3 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 3 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F603

b:102.0
occ:1.00
 F3 A:AF3603 0.0 102.0 1.0
AL A:AF3603 1.7 102.0 1.0
OG1 A:THR99 2.5 93.9 1.0
O1B A:ADP601 2.6 93.1 1.0
F1 A:AF3603 3.0 102.0 1.0
F2 A:AF3603 3.0 102.0 1.0
N A:GLY66 3.0 97.0 1.0
OD1 A:ASP65 3.1 99.7 1.0
O3B A:ADP601 3.3 93.1 1.0
PB A:ADP601 3.4 93.1 1.0
N A:THR99 3.5 93.9 1.0
CA A:ASP65 3.5 99.7 1.0
CB A:THR98 3.7 96.0 1.0
C A:ASP65 3.7 99.7 1.0
CB A:THR99 3.8 93.9 1.0
O A:ASN64 3.9 96.4 1.0
CA A:GLY66 4.0 97.0 1.0
CG A:ASP65 4.1 99.7 1.0
C A:THR98 4.1 96.0 1.0
O2B A:ADP601 4.2 93.1 1.0
CA A:THR99 4.2 93.9 1.0
CA A:THR98 4.2 96.0 1.0
N A:THR98 4.3 96.0 1.0
OG1 A:THR98 4.3 96.0 1.0
CB A:ASP65 4.4 99.7 1.0
N A:ASP65 4.5 99.7 1.0
CG2 A:THR98 4.6 96.0 1.0
C A:ASN64 4.6 96.4 1.0
O3A A:ADP601 4.8 93.1 1.0
CG2 A:THR99 4.8 93.9 1.0
O A:ASP65 4.9 99.7 1.0

Fluorine binding site 4 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 4 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:98.5
occ:1.00
 F1 B:AF3603 0.0 98.5 1.0
AL B:AF3603 1.7 98.5 1.0
O1B B:ADP601 2.2 96.3 1.0
MG B:MG602 2.5 95.2 1.0
NZ B:LYS164 2.6 95.2 1.0
F2 B:AF3603 3.0 98.5 1.0
F3 B:AF3603 3.0 98.5 1.0
OD1 B:ASP59 3.1 98.5 1.0
PB B:ADP601 3.3 96.3 1.0
O2B B:ADP601 3.4 96.3 1.0
CE B:LYS164 3.4 95.2 1.0
OD1 B:ASP90 3.7 96.4 1.0
O3B B:ADP601 4.3 96.3 1.0
CG B:ASP59 4.3 98.5 1.0
O2A B:ADP601 4.3 96.3 1.0
O1A B:ADP601 4.4 96.3 1.0
O3A B:ADP601 4.4 96.3 1.0
CD B:LYS164 4.4 95.2 1.0
OD2 B:ASP386 4.5 97.0 1.0
PA B:ADP601 4.5 96.3 1.0
CG B:ASP90 4.8 96.4 1.0
CB B:SER163 4.8 95.3 1.0
ND2 B:ASN58 4.9 95.7 1.0
CA B:ASP59 4.9 98.5 1.0

Fluorine binding site 5 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 5 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:98.5
occ:1.00
 F2 B:AF3603 0.0 98.5 1.0
AL B:AF3603 1.7 98.5 1.0
OD2 B:ASP386 2.3 97.0 1.0
OD1 B:ASP59 2.3 98.5 1.0
F1 B:AF3603 3.0 98.5 1.0
F3 B:AF3603 3.0 98.5 1.0
CG B:ASP386 3.1 97.0 1.0
CG B:ASP59 3.2 98.5 1.0
O B:GLY89 3.4 96.5 1.0
OD1 B:ASP90 3.5 96.4 1.0
OD2 B:ASP59 3.7 98.5 1.0
O B:HOH701 3.7 91.9 1.0
CB B:ASP386 3.7 97.0 1.0
NZ B:LYS164 3.8 95.2 1.0
CA B:ASP90 3.9 96.4 1.0
OD1 B:ASP386 4.0 97.0 1.0
CE B:LYS164 4.1 95.2 1.0
CB B:ASP59 4.2 98.5 1.0
MG B:MG602 4.3 95.2 1.0
C B:GLY89 4.3 96.5 1.0
CG B:ASP90 4.3 96.4 1.0
O2B B:ADP601 4.4 96.3 1.0
CB B:ASP90 4.5 96.4 1.0
N B:ASP90 4.5 96.4 1.0
N B:GLY91 4.6 95.7 1.0
O1B B:ADP601 4.7 96.3 1.0
OG1 B:THR92 4.7 95.6 1.0
C B:ASP90 4.8 96.4 1.0
CA B:ASP59 4.9 98.5 1.0

Fluorine binding site 6 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 6 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:98.5
occ:1.00
 F3 B:AF3603 0.0 98.5 1.0
AL B:AF3603 1.7 98.5 1.0
OG1 B:THR92 2.7 95.6 1.0
F2 B:AF3603 3.0 98.5 1.0
F1 B:AF3603 3.0 98.5 1.0
N B:THR92 3.0 95.6 1.0
O3B B:ADP601 3.1 96.3 1.0
O1B B:ADP601 3.2 96.3 1.0
PB B:ADP601 3.2 96.3 1.0
O2B B:ADP601 3.3 96.3 1.0
N B:GLY91 3.5 95.7 1.0
OD1 B:ASP59 3.6 98.5 1.0
CB B:THR92 3.6 95.6 1.0
N B:THR93 3.6 94.5 1.0
CA B:THR92 3.8 95.6 1.0
C B:GLY91 4.0 95.7 1.0
CG2 B:THR92 4.0 95.6 1.0
CA B:GLY91 4.1 95.7 1.0
OG1 B:THR93 4.1 94.5 1.0
MG B:MG602 4.2 95.2 1.0
C B:THR92 4.2 95.6 1.0
CG2 B:THR93 4.2 94.5 1.0
C B:ASP90 4.4 96.4 1.0
CA B:ASP90 4.5 96.4 1.0
CG B:ASP59 4.5 98.5 1.0
OD1 B:ASP90 4.5 96.4 1.0
CB B:THR93 4.6 94.5 1.0
CA B:ASP59 4.6 98.5 1.0
CB B:ASP59 4.7 98.5 1.0
N B:GLY60 4.7 95.8 1.0
CA B:THR93 4.7 94.5 1.0
O3A B:ADP601 4.8 96.3 1.0

Fluorine binding site 7 out of 42 in 7yly

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Fluorine binding site 7 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:99.9
occ:1.00
 F1 D:AF3603 0.0 99.9 1.0
AL D:AF3603 1.7 99.9 1.0
O1B D:ADP601 2.3 93.1 1.0
F3 D:AF3603 2.9 99.9 1.0
F2 D:AF3603 2.9 99.9 1.0
O D:ASN59 3.0 92.0 1.0
OD1 D:ASN59 3.1 92.0 1.0
PB D:ADP601 3.4 93.1 1.0
CA D:ASP60 3.5 94.4 1.0
O3B D:ADP601 3.6 93.1 1.0
C D:ASN59 3.7 92.0 1.0
N D:GLY61 3.8 91.9 1.0
O1A D:ADP601 3.9 93.1 1.0
N D:ASP60 4.0 94.4 1.0
NZ D:LYS161 4.0 94.5 1.0
C D:ASP60 4.1 94.4 1.0
CG D:ASN59 4.2 92.0 1.0
OD1 D:ASP60 4.3 94.4 1.0
O3A D:ADP601 4.3 93.1 1.0
CG2 D:THR94 4.4 93.5 1.0
O D:SER38 4.5 91.2 1.0
CE D:LYS161 4.5 94.5 1.0
OG1 D:THR93 4.5 93.5 1.0
O2B D:ADP601 4.6 93.1 1.0
CB D:ASP60 4.6 94.4 1.0
PA D:ADP601 4.7 93.1 1.0
CB D:ASN59 4.9 92.0 1.0
OG D:SER38 4.9 91.2 1.0
CB D:THR94 4.9 93.5 1.0
CA D:ASN59 4.9 92.0 1.0
CG D:ASP60 4.9 94.4 1.0
CA D:GLY61 5.0 91.9 1.0

Fluorine binding site 8 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 8 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:99.9
occ:1.00
 F2 D:AF3603 0.0 99.9 1.0
AL D:AF3603 1.7 99.9 1.0
OD1 D:ASP60 2.3 94.4 1.0
OG1 D:THR93 2.8 93.5 1.0
O1B D:ADP601 2.9 93.1 1.0
F3 D:AF3603 2.9 99.9 1.0
F1 D:AF3603 2.9 99.9 1.0
OD2 D:ASP396 3.0 98.0 1.0
O3B D:ADP601 3.1 93.1 1.0
CG D:ASP60 3.1 94.4 1.0
PB D:ADP601 3.2 93.1 1.0
CA D:ASP60 3.5 94.4 1.0
O2B D:ADP601 3.6 93.1 1.0
CB D:ASP60 3.6 94.4 1.0
NZ D:LYS161 3.8 94.5 1.0
N D:GLY61 4.0 91.9 1.0
OD2 D:ASP60 4.0 94.4 1.0
CB D:THR93 4.0 93.5 1.0
CG D:ASP396 4.1 98.0 1.0
CG2 D:THR93 4.2 93.5 1.0
C D:ASP60 4.3 94.4 1.0
O D:HOH701 4.4 74.0 1.0
N D:THR93 4.4 93.5 1.0
N D:ASP60 4.6 94.4 1.0
OD1 D:ASP396 4.7 98.0 1.0
O3A D:ADP601 4.8 93.1 1.0
CA D:THR93 4.8 93.5 1.0

Fluorine binding site 9 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 9 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:99.9
occ:1.00
 F3 D:AF3603 0.0 99.9 1.0
AL D:AF3603 1.7 99.9 1.0
O3B D:ADP601 2.2 93.1 1.0
OG1 D:THR93 2.2 93.5 1.0
N D:THR94 2.6 93.5 1.0
F1 D:AF3603 2.9 99.9 1.0
F2 D:AF3603 2.9 99.9 1.0
N D:GLY61 3.1 91.9 1.0
CB D:THR94 3.1 93.5 1.0
C D:THR93 3.3 93.5 1.0
CG2 D:THR94 3.3 93.5 1.0
PB D:ADP601 3.3 93.1 1.0
CB D:THR93 3.4 93.5 1.0
CA D:THR94 3.4 93.5 1.0
N D:THR93 3.5 93.5 1.0
O1B D:ADP601 3.5 93.1 1.0
CA D:THR93 3.5 93.5 1.0
OD1 D:ASP60 3.6 94.4 1.0
CA D:GLY61 3.6 91.9 1.0
O D:THR93 4.2 93.5 1.0
C D:ASP60 4.2 94.4 1.0
O3A D:ADP601 4.3 93.1 1.0
CA D:ASP60 4.4 94.4 1.0
C D:GLY92 4.4 93.8 1.0
CG2 D:THR93 4.5 93.5 1.0
O2B D:ADP601 4.5 93.1 1.0
OG1 D:THR94 4.5 93.5 1.0
N D:HIS62 4.6 91.3 1.0
C D:GLY61 4.6 91.9 1.0
C D:THR94 4.7 93.5 1.0
CG D:ASP60 4.7 94.4 1.0
O D:ASN59 4.8 92.0 1.0
N D:SER95 5.0 93.1 1.0

Fluorine binding site 10 out of 42 in 7yly

Go back to Fluorine Binding Sites List in 7yly
Fluorine binding site 10 out of 42 in the Yeast Tric-PLP2 Complex at S5 Closed Tric State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Yeast Tric-PLP2 Complex at S5 Closed Tric State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F603

b:99.0
occ:1.00
 F1 E:AF3603 0.0 99.0 1.0
AL E:AF3603 1.7 99.0 1.0
CE E:LYS191 1.8 98.8 1.0
NZ E:LYS191 2.4 98.8 1.0
O3B E:ADP601 2.5 95.1 1.0
CD E:LYS191 2.9 98.8 1.0
F3 E:AF3603 3.0 99.0 1.0
F2 E:AF3603 3.0 99.0 1.0
MG E:MG602 3.4 95.4 1.0
PB E:ADP601 3.5 95.1 1.0
O2B E:ADP601 3.8 95.1 1.0
O3A E:ADP601 3.9 95.1 1.0
OD1 E:ASP86 3.9 97.6 1.0
OG E:SER190 4.2 98.6 1.0
CG E:LYS191 4.2 98.8 1.0
O E:ASN85 4.3 95.0 1.0
O2A E:ADP601 4.3 95.1 1.0
PA E:ADP601 4.7 95.1 1.0
ND2 E:ASN85 4.7 95.0 1.0
CG E:ASP86 4.8 97.6 1.0
OD2 E:ASP425 4.8 102.5 1.0
CB E:ASP86 4.8 97.6 1.0
CA E:ASP86 4.9 97.6 1.0
O1B E:ADP601 4.9 95.1 1.0

Reference:

W.Han, M.Jin, C.Liu, Q.Zhao, S.Wang, Y.Wang, Y.Yin, C.Peng, Y.Wang, Y.Cong. Structural Basis of PLP2-Mediated Cytoskeletal Protein Folding By Tric/Cct. Sci Adv V. 9 E1207 2023.
ISSN: ESSN 2375-2548
PubMed: 36921056
DOI: 10.1126/SCIADV.ADE1207
Page generated: Wed Jul 16 02:09:19 2025

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