Fluorine in PDB 7z88: Dna-Pk in the Intermediate State

All present enzymatic activity of Dna-Pk in the Intermediate State:
2.7.11.1;

The structure of Dna-Pk in the Intermediate State also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Fluorine atom in the Dna-Pk in the Intermediate State (pdb code 7z88). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Dna-Pk in the Intermediate State, PDB code: 7z88:

Fluorine binding site 1 out of 1 in the Dna-Pk in the Intermediate State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Dna-Pk in the Intermediate State within 5.0Å range: probe atom residue distance (Å) B Occ A:F4201 b:15.6 occ:1.00 F32 A:1IX4201 0.0 15.6 1.0 C13 A:1IX4201 1.3 15.6 1.0 C14 A:1IX4201 2.3 15.6 1.0 C12 A:1IX4201 2.4 15.6 1.0 C16 A:1IX4201 2.8 15.6 1.0 N17 A:1IX4201 2.9 15.6 1.0 CE A:LYS3753 3.4 23.5 1.0 C15 A:1IX4201 3.6 15.6 1.0 C11 A:1IX4201 3.7 15.6 1.0 CG A:PRO3735 3.8 23.2 1.0 NZ A:LYS3753 3.8 23.5 1.0 C21 A:1IX4201 4.0 15.6 1.0 C18 A:1IX4201 4.0 15.6 1.0 C10 A:1IX4201 4.2 15.6 1.0 CD A:PRO3735 4.2 23.2 1.0 SD A:MET3729 4.3 25.1 1.0 CD1 A:LEU3751 4.3 12.1 1.0 CE A:MET3729 4.3 25.1 1.0 CB A:PRO3735 4.5 23.2 1.0 C22 A:1IX4201 4.7 15.6 1.0 CD A:LYS3753 4.7 23.5 1.0 N19 A:1IX4201 4.9 15.6 1.0 C20 A:1IX4201 4.9 15.6 1.0

S.Liang, T.L.Blundell. Human Dna-Dependent Protein Kinase Activation Mechanism. Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
PubMed: 36604499
DOI: 10.1038/S41594-022-00881-W