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Fluorine in PDB 7zyx: Dimeric I-Motif From 2'Farabinocytidine-Modified TC5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 (pdb code 7zyx). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 10 binding sites of Fluorine where determined in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5, PDB code: 7zyx:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 10 in 7zyx

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Fluorine binding site 1 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2

b:0.0
occ:1.00
F A:CFL2 0.0 0.0 1.0
C2' A:CFL2 1.4 0.0 1.0
H2' A:CFL2 2.0 0.0 1.0
C3' A:CFL2 2.4 0.0 1.0
C1' A:CFL2 2.4 0.0 1.0
H5'2 A:CFL2 2.5 0.0 1.0
HN42 B:CFL12 2.5 0.0 1.0
H3' A:CFL2 2.5 0.0 1.0
HN41 B:CFL12 2.7 0.0 1.0
N1 A:CFL2 2.8 0.0 1.0
H6 A:CFL2 2.9 0.0 1.0
N4 B:CFL12 2.9 0.0 1.0
O4' A:CFL2 3.0 0.0 1.0
C4' A:CFL2 3.0 0.0 1.0
C6 A:CFL2 3.0 0.0 1.0
C5' A:CFL2 3.2 0.0 1.0
H1' A:CFL2 3.3 0.0 1.0
O2 A:CFL6 3.4 0.0 1.0
O3' A:CFL2 3.6 0.0 1.0
H5'2 A:CFL3 3.7 0.0 1.0
H5'1 A:CFL2 3.7 0.0 1.0
C2 A:CFL2 3.9 0.0 1.0
H1' A:CFL6 4.0 0.0 1.0
O4' A:CFL3 4.0 0.0 1.0
C6 A:CFL3 4.0 0.0 1.0
H4' A:CFL2 4.1 0.0 1.0
C5 A:CFL2 4.1 0.0 1.0
H6 A:CFL3 4.1 0.0 1.0
C4 B:CFL12 4.2 0.0 1.0
N1 A:CFL3 4.3 0.0 1.0
O5' A:CFL2 4.3 0.0 1.0
O2 A:CFL2 4.4 0.0 1.0
C5 A:CFL3 4.4 0.0 1.0
C5' A:CFL3 4.5 0.0 1.0
C2 A:CFL6 4.6 0.0 1.0
H5 A:CFL3 4.6 0.0 1.0
H5 A:CFL2 4.7 0.0 1.0
N3 A:CFL2 4.7 0.0 1.0
O5' A:CFL3 4.8 0.0 1.0
H2'' A:DT1 4.8 0.0 1.0
C1' A:CFL3 4.8 0.0 1.0
P A:CFL3 4.8 0.0 1.0
C4 A:CFL2 4.8 0.0 1.0
C4' A:CFL3 4.9 0.0 1.0
N3 B:CFL12 4.9 0.0 1.0
O1P A:CFL3 4.9 0.0 1.0
H5 B:CFL12 4.9 0.0 1.0
C1' A:CFL6 5.0 0.0 1.0
C2 A:CFL3 5.0 0.0 1.0
C4 A:CFL3 5.0 0.0 1.0
H3' A:CFL3 5.0 0.0 1.0

Fluorine binding site 2 out of 10 in 7zyx

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Fluorine binding site 2 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3

b:0.0
occ:1.00
F A:CFL3 0.0 0.0 1.0
C2' A:CFL3 1.4 0.0 1.0
H2' A:CFL3 2.1 0.0 1.0
H6 A:CFL3 2.3 0.0 1.0
C3' A:CFL3 2.4 0.0 1.0
C1' A:CFL3 2.4 0.0 1.0
H3' A:CFL3 2.5 0.0 1.0
N1 A:CFL3 2.7 0.0 1.0
C6 A:CFL3 2.7 0.0 1.0
HN42 B:CFL11 2.8 0.0 1.0
HN41 B:CFL11 2.9 0.0 1.0
O4' A:CFL4 2.9 0.0 1.0
H1' A:CFL3 3.1 0.0 1.0
O3' A:CFL3 3.2 0.0 1.0
N4 B:CFL11 3.2 0.0 1.0
O5' A:CFL4 3.2 0.0 1.0
O4' A:CFL3 3.4 0.0 1.0
O2 A:CFL5 3.5 0.0 1.0
C4' A:CFL3 3.5 0.0 1.0
H4' A:CFL4 3.6 0.0 1.0
C4' A:CFL4 3.6 0.0 1.0
H1' A:CFL5 3.7 0.0 1.0
P A:CFL4 3.7 0.0 1.0
C2 A:CFL3 3.8 0.0 1.0
C5 A:CFL3 3.8 0.0 1.0
C5' A:CFL4 3.9 0.0 1.0
H6 A:CFL4 3.9 0.0 1.0
O1P A:CFL4 4.0 0.0 1.0
H4' A:CFL3 4.0 0.0 1.0
C6 A:CFL4 4.1 0.0 1.0
C1' A:CFL4 4.1 0.0 1.0
H5'2 A:CFL4 4.1 0.0 1.0
N1 A:CFL4 4.2 0.0 1.0
H5 A:CFL3 4.3 0.0 1.0
O2 A:CFL3 4.4 0.0 1.0
C4 B:CFL11 4.4 0.0 1.0
H1' A:CFL4 4.5 0.0 1.0
N3 A:CFL3 4.6 0.0 1.0
C4 A:CFL3 4.6 0.0 1.0
C2 A:CFL5 4.6 0.0 1.0
C5 A:CFL4 4.7 0.0 1.0
H5'2 A:CFL3 4.7 0.0 1.0
C5' A:CFL3 4.7 0.0 1.0
C1' A:CFL5 4.7 0.0 1.0
H5'1 A:CFL4 4.9 0.0 1.0
C2 A:CFL4 4.9 0.0 1.0
H5 A:CFL4 5.0 0.0 1.0

Fluorine binding site 3 out of 10 in 7zyx

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Fluorine binding site 3 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F4

b:0.0
occ:1.00
F A:CFL4 0.0 0.0 1.0
C2' A:CFL4 1.4 0.0 1.0
H2' A:CFL4 2.0 0.0 1.0
H5'2 A:CFL4 2.3 0.0 1.0
C3' A:CFL4 2.4 0.0 1.0
C1' A:CFL4 2.4 0.0 1.0
H3' A:CFL4 2.5 0.0 1.0
H6 A:CFL4 2.6 0.0 1.0
N1 A:CFL4 2.9 0.0 1.0
C4' A:CFL4 2.9 0.0 1.0
C5' A:CFL4 2.9 0.0 1.0
C6 A:CFL4 3.0 0.0 1.0
O4' A:CFL4 3.0 0.0 1.0
H5'1 A:CFL4 3.2 0.0 1.0
H1' A:CFL4 3.3 0.0 1.0
O3' A:CFL4 3.6 0.0 1.0
O2P A:CFL5 3.9 0.0 1.0
H4' A:CFL4 3.9 0.0 1.0
C2 A:CFL4 4.0 0.0 1.0
C5 A:CFL4 4.2 0.0 1.0
O5' A:CFL4 4.2 0.0 1.0
P A:CFL5 4.4 0.0 1.0
O2 A:CFL4 4.6 0.0 1.0
H5 A:CFL4 4.7 0.0 1.0
O5' A:CFL5 4.9 0.0 1.0
N3 A:CFL4 5.0 0.0 1.0

Fluorine binding site 4 out of 10 in 7zyx

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Fluorine binding site 4 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F5

b:0.0
occ:1.00
F A:CFL5 0.0 0.0 1.0
C2' A:CFL5 1.4 0.0 1.0
H2' A:CFL5 2.1 0.0 1.0
H6 A:CFL5 2.3 0.0 1.0
C1' A:CFL5 2.4 0.0 1.0
C3' A:CFL5 2.4 0.0 1.0
H3' A:CFL5 2.5 0.0 1.0
N1 A:CFL5 2.7 0.0 1.0
C6 A:CFL5 2.7 0.0 1.0
HN42 B:CFL9 2.7 0.0 1.0
HN41 B:CFL9 2.8 0.0 1.0
H1' A:CFL5 3.0 0.0 1.0
N4 B:CFL9 3.1 0.0 1.0
O1P A:CFL6 3.1 0.0 1.0
O5' A:CFL6 3.2 0.0 1.0
O3' A:CFL5 3.2 0.0 1.0
H6 A:CFL6 3.3 0.0 1.0
O4' A:CFL5 3.4 0.0 1.0
P A:CFL6 3.5 0.0 1.0
O2 A:CFL3 3.5 0.0 1.0
C6 A:CFL6 3.5 0.0 1.0
O4' A:CFL6 3.5 0.0 1.0
C4' A:CFL5 3.5 0.0 1.0
H1' A:CFL3 3.7 0.0 1.0
C5 A:CFL5 3.8 0.0 1.0
C2 A:CFL5 3.8 0.0 1.0
H5'1 A:CFL6 4.0 0.0 1.0
N1 A:CFL6 4.0 0.0 1.0
C5 A:CFL6 4.0 0.0 1.0
H4' A:CFL5 4.0 0.0 1.0
C5' A:CFL6 4.0 0.0 1.0
H5 A:CFL6 4.2 0.0 1.0
H5 A:CFL5 4.3 0.0 1.0
C4' A:CFL6 4.4 0.0 1.0
C4 B:CFL9 4.4 0.0 1.0
C1' A:CFL6 4.4 0.0 1.0
O2 A:CFL5 4.5 0.0 1.0
C4 A:CFL5 4.6 0.0 1.0
N3 A:CFL5 4.6 0.0 1.0
C2 A:CFL3 4.7 0.0 1.0
H5'2 A:CFL5 4.7 0.0 1.0
C5' A:CFL5 4.8 0.0 1.0
C2 A:CFL6 4.8 0.0 1.0
H3' A:CFL6 4.8 0.0 1.0
C1' A:CFL3 4.8 0.0 1.0
C4 A:CFL6 4.8 0.0 1.0
O2P A:CFL6 4.9 0.0 1.0
H2' A:CFL3 5.0 0.0 1.0

Fluorine binding site 5 out of 10 in 7zyx

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Fluorine binding site 5 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F6

b:0.0
occ:1.00
F A:CFL6 0.0 0.0 1.0
C2' A:CFL6 1.4 0.0 1.0
H2' A:CFL6 2.0 0.0 1.0
C3' A:CFL6 2.4 0.0 1.0
C1' A:CFL6 2.4 0.0 1.0
H3' A:CFL6 2.5 0.0 1.0
N1 A:CFL6 2.7 0.0 1.0
C6 A:CFL6 2.9 0.0 1.0
H6 A:CFL6 3.0 0.0 1.0
H1' A:CFL6 3.1 0.0 1.0
HN41 B:CFL8 3.1 0.0 1.0
O3' A:CFL6 3.2 0.0 1.0
HN42 B:CFL8 3.2 0.0 1.0
O2 A:CFL2 3.4 0.0 1.0
O4' A:CFL6 3.4 0.0 1.0
N4 B:CFL8 3.5 0.0 1.0
C2 A:CFL6 3.5 0.0 1.0
C4' A:CFL6 3.5 0.0 1.0
HO3' A:CFL6 3.6 0.0 1.0
H1' A:CFL2 3.7 0.0 1.0
C5 A:CFL6 3.9 0.0 1.0
H4' A:CFL6 4.1 0.0 1.0
O2 A:CFL6 4.1 0.0 1.0
H2' A:CFL2 4.2 0.0 1.0
N3 A:CFL6 4.3 0.0 1.0
C4 A:CFL6 4.5 0.0 1.0
H5 A:CFL6 4.5 0.0 1.0
O3' A:CFL2 4.5 0.0 1.0
C2 A:CFL2 4.6 0.0 1.0
C1' A:CFL2 4.7 0.0 1.0
C4 B:CFL8 4.7 0.0 1.0
C5' A:CFL6 4.7 0.0 1.0
O5' A:CFL6 4.8 0.0 1.0
C2' A:CFL2 4.9 0.0 1.0

Fluorine binding site 6 out of 10 in 7zyx

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Fluorine binding site 6 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F8

b:0.0
occ:1.00
F B:CFL8 0.0 0.0 1.0
C2' B:CFL8 1.4 0.0 1.0
H2' B:CFL8 2.0 0.0 1.0
HN42 A:CFL6 2.3 0.0 1.0
C3' B:CFL8 2.4 0.0 1.0
H3' B:CFL8 2.4 0.0 1.0
C1' B:CFL8 2.4 0.0 1.0
H5'2 B:CFL8 2.5 0.0 1.0
HN41 A:CFL6 2.6 0.0 1.0
N1 B:CFL8 2.8 0.0 1.0
N4 A:CFL6 2.8 0.0 1.0
H6 B:CFL8 2.9 0.0 1.0
C6 B:CFL8 3.0 0.0 1.0
C4' B:CFL8 3.0 0.0 1.0
O4' B:CFL8 3.1 0.0 1.0
C5' B:CFL8 3.2 0.0 1.0
H1' B:CFL8 3.3 0.0 1.0
O2 B:CFL12 3.3 0.0 1.0
C6 B:CFL9 3.4 0.0 1.0
H6 B:CFL9 3.5 0.0 1.0
O3' B:CFL8 3.6 0.0 1.0
C5 B:CFL9 3.6 0.0 1.0
C2 B:CFL8 3.7 0.0 1.0
H5'1 B:CFL8 3.8 0.0 1.0
H5 B:CFL9 3.8 0.0 1.0
N1 B:CFL9 3.8 0.0 1.0
H1' B:CFL12 3.9 0.0 1.0
C5 B:CFL8 4.0 0.0 1.0
H4' B:CFL8 4.1 0.0 1.0
C4 A:CFL6 4.1 0.0 1.0
O2 B:CFL8 4.2 0.0 1.0
C4 B:CFL9 4.3 0.0 1.0
O4' B:CFL9 4.3 0.0 1.0
O5' B:CFL8 4.4 0.0 1.0
N3 B:CFL8 4.5 0.0 1.0
C2 B:CFL9 4.5 0.0 1.0
H5 B:CFL8 4.5 0.0 1.0
C2 B:CFL12 4.6 0.0 1.0
C4 B:CFL8 4.6 0.0 1.0
C1' B:CFL9 4.6 0.0 1.0
N3 B:CFL9 4.7 0.0 1.0
H5 A:CFL6 4.8 0.0 1.0
O5' B:CFL9 4.8 0.0 1.0
P B:CFL9 4.8 0.0 1.0
C1' B:CFL12 4.9 0.0 1.0
N3 A:CFL6 4.9 0.0 1.0
H2' B:CFL12 4.9 0.0 1.0
C5 A:CFL6 4.9 0.0 1.0
H2'' B:DT7 5.0 0.0 1.0

Fluorine binding site 7 out of 10 in 7zyx

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Fluorine binding site 7 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F9

b:0.0
occ:1.00
F B:CFL9 0.0 0.0 1.0
C2' B:CFL9 1.4 0.0 1.0
H2' B:CFL9 2.1 0.0 1.0
H6 B:CFL9 2.3 0.0 1.0
C3' B:CFL9 2.4 0.0 1.0
C1' B:CFL9 2.4 0.0 1.0
H3' B:CFL9 2.5 0.0 1.0
C6 B:CFL9 2.7 0.0 1.0
N1 B:CFL9 2.7 0.0 1.0
HN42 A:CFL5 2.8 0.0 1.0
O4' B:CFL10 3.0 0.0 1.0
HN41 A:CFL5 3.0 0.0 1.0
H1' B:CFL9 3.1 0.0 1.0
O5' B:CFL10 3.1 0.0 1.0
O3' B:CFL9 3.2 0.0 1.0
N4 A:CFL5 3.2 0.0 1.0
O4' B:CFL9 3.5 0.0 1.0
C4' B:CFL9 3.5 0.0 1.0
H4' B:CFL10 3.6 0.0 1.0
C4' B:CFL10 3.6 0.0 1.0
P B:CFL10 3.7 0.0 1.0
C5 B:CFL9 3.7 0.0 1.0
O2 B:CFL11 3.7 0.0 1.0
C2 B:CFL9 3.8 0.0 1.0
H6 B:CFL10 3.8 0.0 1.0
C5' B:CFL10 3.8 0.0 1.0
H1' B:CFL11 3.8 0.0 1.0
H4' B:CFL9 3.9 0.0 1.0
O2P B:CFL10 3.9 0.0 1.0
H5'2 B:CFL10 4.0 0.0 1.0
C6 B:CFL10 4.1 0.0 1.0
H5 B:CFL9 4.2 0.0 1.0
C1' B:CFL10 4.2 0.0 1.0
O2 B:CFL9 4.4 0.0 1.0
N1 B:CFL10 4.4 0.0 1.0
C4 A:CFL5 4.5 0.0 1.0
C4 B:CFL9 4.5 0.0 1.0
N3 B:CFL9 4.5 0.0 1.0
H1' B:CFL10 4.7 0.0 1.0
H5'1 B:CFL10 4.8 0.0 1.0
C5' B:CFL9 4.8 0.0 1.0
C5 B:CFL10 4.9 0.0 1.0
C2 B:CFL11 4.9 0.0 1.0
C1' B:CFL11 4.9 0.0 1.0
O5' B:CFL9 5.0 0.0 1.0
O1P B:CFL10 5.0 0.0 1.0

Fluorine binding site 8 out of 10 in 7zyx

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Fluorine binding site 8 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F10

b:0.0
occ:1.00
F B:CFL10 0.0 0.0 1.0
C2' B:CFL10 1.4 0.0 1.0
H2' B:CFL10 2.0 0.0 1.0
H5'2 B:CFL10 2.3 0.0 1.0
C3' B:CFL10 2.4 0.0 1.0
C1' B:CFL10 2.4 0.0 1.0
H3' B:CFL10 2.5 0.0 1.0
H6 B:CFL10 2.7 0.0 1.0
N1 B:CFL10 2.9 0.0 1.0
C4' B:CFL10 2.9 0.0 1.0
C5' B:CFL10 2.9 0.0 1.0
O4' B:CFL10 3.0 0.0 1.0
C6 B:CFL10 3.0 0.0 1.0
H5'1 B:CFL10 3.2 0.0 1.0
H1' B:CFL10 3.3 0.0 1.0
O3' B:CFL10 3.6 0.0 1.0
H4' B:CFL10 3.9 0.0 1.0
C2 B:CFL10 4.0 0.0 1.0
C5 B:CFL10 4.2 0.0 1.0
O5' B:CFL10 4.2 0.0 1.0
P B:CFL11 4.4 0.0 1.0
O2P B:CFL11 4.4 0.0 1.0
O2 B:CFL10 4.5 0.0 1.0
O1P B:CFL11 4.5 0.0 1.0
H5 B:CFL10 4.7 0.0 1.0
N3 B:CFL10 4.9 0.0 1.0

Fluorine binding site 9 out of 10 in 7zyx

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Fluorine binding site 9 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F11

b:0.0
occ:1.00
F B:CFL11 0.0 0.0 1.0
C2' B:CFL11 1.4 0.0 1.0
H2' B:CFL11 2.1 0.0 1.0
H6 B:CFL11 2.3 0.0 1.0
C3' B:CFL11 2.4 0.0 1.0
C1' B:CFL11 2.4 0.0 1.0
HN42 A:CFL3 2.4 0.0 1.0
H3' B:CFL11 2.4 0.0 1.0
HN41 A:CFL3 2.6 0.0 1.0
N1 B:CFL11 2.7 0.0 1.0
C6 B:CFL11 2.7 0.0 1.0
N4 A:CFL3 2.9 0.0 1.0
H1' B:CFL11 3.1 0.0 1.0
O3' B:CFL11 3.2 0.0 1.0
O5' B:CFL12 3.2 0.0 1.0
O2P B:CFL12 3.3 0.0 1.0
O2 B:CFL9 3.4 0.0 1.0
H6 B:CFL12 3.4 0.0 1.0
O4' B:CFL11 3.4 0.0 1.0
O4' B:CFL12 3.5 0.0 1.0
P B:CFL12 3.5 0.0 1.0
C4' B:CFL11 3.5 0.0 1.0
C6 B:CFL12 3.7 0.0 1.0
H1' B:CFL9 3.7 0.0 1.0
C2 B:CFL11 3.8 0.0 1.0
C5 B:CFL11 3.8 0.0 1.0
H5'1 B:CFL12 3.9 0.0 1.0
C5' B:CFL12 4.0 0.0 1.0
H4' B:CFL11 4.1 0.0 1.0
N1 B:CFL12 4.1 0.0 1.0
C5 B:CFL12 4.1 0.0 1.0
C4 A:CFL3 4.1 0.0 1.0
H5 B:CFL12 4.3 0.0 1.0
H5 B:CFL11 4.3 0.0 1.0
C4' B:CFL12 4.4 0.0 1.0
O2 B:CFL11 4.4 0.0 1.0
C1' B:CFL12 4.4 0.0 1.0
C2 B:CFL9 4.6 0.0 1.0
C4 B:CFL11 4.6 0.0 1.0
N3 B:CFL11 4.6 0.0 1.0
C1' B:CFL9 4.7 0.0 1.0
C5' B:CFL11 4.7 0.0 1.0
H5 A:CFL3 4.8 0.0 1.0
H5'2 B:CFL11 4.8 0.0 1.0
C2 B:CFL12 4.9 0.0 1.0
N3 A:CFL3 4.9 0.0 1.0
C4 B:CFL12 4.9 0.0 1.0
H5'1 B:CFL11 4.9 0.0 1.0
H2' B:CFL9 4.9 0.0 1.0
C5 A:CFL3 5.0 0.0 1.0
O1P B:CFL12 5.0 0.0 1.0
H1' B:CFL12 5.0 0.0 1.0

Fluorine binding site 10 out of 10 in 7zyx

Go back to Fluorine Binding Sites List in 7zyx
Fluorine binding site 10 out of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F12

b:0.0
occ:1.00
F B:CFL12 0.0 0.0 1.0
C2' B:CFL12 1.4 0.0 1.0
H2' B:CFL12 2.0 0.0 1.0
C3' B:CFL12 2.4 0.0 1.0
H3' B:CFL12 2.4 0.0 1.0
C1' B:CFL12 2.4 0.0 1.0
HN42 A:CFL2 2.7 0.0 1.0
N1 B:CFL12 2.7 0.0 1.0
HN41 A:CFL2 2.7 0.0 1.0
HO3' B:CFL12 2.9 0.0 1.0
C6 B:CFL12 3.0 0.0 1.0
H6 B:CFL12 3.0 0.0 1.0
N4 A:CFL2 3.0 0.0 1.0
H1' B:CFL12 3.1 0.0 1.0
O3' B:CFL12 3.2 0.0 1.0
O2 B:CFL8 3.3 0.0 1.0
O4' B:CFL12 3.4 0.0 1.0
C4' B:CFL12 3.5 0.0 1.0
C2 B:CFL12 3.6 0.0 1.0
H1' B:CFL8 3.8 0.0 1.0
C5 B:CFL12 4.0 0.0 1.0
H4' B:CFL12 4.0 0.0 1.0
O2 B:CFL12 4.1 0.0 1.0
H2' B:CFL8 4.2 0.0 1.0
C4 A:CFL2 4.3 0.0 1.0
C2 B:CFL8 4.5 0.0 1.0
N3 B:CFL12 4.5 0.0 1.0
C4 B:CFL12 4.6 0.0 1.0
H5 B:CFL12 4.6 0.0 1.0
C5' B:CFL12 4.7 0.0 1.0
C1' B:CFL8 4.8 0.0 1.0
O5' B:CFL12 4.8 0.0 1.0
H73 A:DT1 4.9 0.0 1.0
N3 A:CFL2 5.0 0.0 1.0
C2' B:CFL8 5.0 0.0 1.0

Reference:

R.El-Khoury, V.Macaluso, C.Hennecker, A.K.Mittermaier, M.Orozco, C.Gonzalez, M.Garavis, M.J.Damha. I-Motif Folding Intermediates with Zero-Nucleotide Loops Are Trapped By 2'-Fluoroarabinocytidine Via F···H and O···H Hydrogen Bonds. Commun Chem V. 6 31 2023.
ISSN: ESSN 2399-3669
PubMed: 36797370
DOI: 10.1038/S42004-023-00831-7
Page generated: Wed Jul 16 02:34:38 2025

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